New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6116735 =	36 (0.680)	5 (0.100)	5/242	NT	12.2%	coding (944/1401 nt)	lpd	dihydrolipoyl dehydrogenase
	?	NC_002947	6116768 =	38 (0.760)					coding (977/1401 nt)	lpd	dihydrolipoyl dehydrogenase

GATTACGTGTTGGTGGCTATCGGCCGTCGCCCTTATACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTG  >  NC_002947/6116587‑6116881                                                                                                                                                     |                                                                                                                                                   ttgtaggcacgtccttcggccttgagctgctcttcagtcttgcccacggtggccatctccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtc                                                                                                                                                    <  6:309928‑M1/1‑1 (MQ=255)   ttACGTGTTGGTGGCTATCGGCCGTCGCCCTTATACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCGCCACCGTACCTCAGTGCCGGGGGTCTGGGTGATTGGCGACGTCACtt                                                                                                                                                  <  2:296999/149‑1 (MQ=255)      cGTGTTGGTGGCTATCGGCCGTCGCCCTTATACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCg                                                                                                                                                <  8:189824/148‑1 (MQ=255)                                 ttATACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCg                                                                                                                       >  2:309464/1‑146 (MQ=255)                                    agtcttgcccacggtggccatctccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGAc                                                                                                                  >  7:286183‑M1/114‑148 (MQ=255)                                       aaaaGGGCTAAGCCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCaa                                                                                                                                         >  8:310900/1‑122 (MQ=255)                                       aaaaGGGCTAAGCCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCaa                                                                                                                                         <  7:310900/122‑1 (MQ=255)                                       aaaaGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAg                                                                                                              >  3:155361/1‑149 (MQ=255)                                          aGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCgg                                                                                                           >  8:243146/1‑149 (MQ=255)                                           gggCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGt                                                                                                          <  5:162042/149‑1 (MQ=255)                                               tAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGACGCGGTGGcc                                                                                                      >  2:331086/1‑149 (MQ=255)                                               tAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGcc                                                                                                      >  2:237878/1‑149 (MQ=255)                                               tAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGcc                                                                                                      >  4:128997/1‑149 (MQ=255)                                                  tggccatctccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCt                                                                                                                                                   <  3:337546‑M1/2‑1 (MQ=255)                                                  tggccatctccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCt                                                                                                                                                   >  4:337546‑M1/100‑101 (MQ=255)                                                        aaaGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                             <  1:342450/149‑1 (MQ=255)                                                        aaaGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                             >  5:309928/1‑149 (MQ=255)                                                          tccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAg                                                                                                                    >  6:42709‑M1/92‑124 (MQ=255)                                                          tccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAg                                                                                                                    <  5:42709‑M1/33‑1 (MQ=255)                                                                 gCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGc                                                                                                                                             <  7:274791/92‑1 (MQ=255)                                                                 gCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGc                                                                                                                                             >  8:274791/1‑92 (MQ=255)                                                                  ccTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCg                                                                                                                       <  6:301471/113‑1 (MQ=255)                                                                  ccTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCg                                                                                                                       >  5:301471/1‑113 (MQ=255)                                                                      gAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGc                                                                                 >  3:2767/1‑147 (MQ=255)                                                                       aaGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAg                                                                              <  2:51899/149‑1 (MQ=255)                                                                       aaGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAg                                                                              <  1:309464/149‑1 (MQ=255)                                                                       aaGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTAACGAACGCATCGCCGGCAAg                                                                              >  3:8437/1‑149 (MQ=255)                                                                              gccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGa                                                                                                                   >  6:224078‑M1/72‑105 (MQ=255)                                                                              gccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGa                                                                                                                   <  5:224078‑M1/34‑1 (MQ=255)                                                                                aGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAg                                                                     <  4:2767/149‑1 (MQ=255)                                                                                 gcgcGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAgg                                                                    <  1:237878/149‑1 (MQ=255)                                                                                  cgcgGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGt                                                                   <  4:8437/149‑1 (MQ=255)                                                                                       cATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACt                                                              <  5:168939/149‑1 (MQ=255)                                                                                              aacaacGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAAcc                                                        >  5:229945/1‑148 (MQ=255)                                                                                                   cGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGt                                                                                                   >  1:102719/1‑100 (MQ=255)                                                                                                   cGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGt                                                                                                   <  2:102719/100‑1 (MQ=255)                                                                                                        accaccGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTc                                                      <  6:138501/140‑1 (MQ=255)                                                                                                        accaccGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTc                                                      >  5:138501/1‑140 (MQ=255)                                                                                                           accGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTg                                          <  6:229945/149‑1 (MQ=255)                                                                                                             cGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGAt                                        <  7:243146/149‑1 (MQ=255)                                                                                                                         ccGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGATGGCGCACAACGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCACCACGAGGTCAACTACAACCTCATCCCTGGCGAGATCTATAcccgccc                            >  8:190659/1‑149 (MQ=255)                                                                                                                                tCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATg                     <  4:155361/149‑1 (MQ=255)                                                                                                                                tCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATg                     >  7:80599/1‑149 (MQ=255)                                                                                                                                    ggTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                             >  4:27320/1‑73 (MQ=255)                                                                                                                                    ggTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                             <  3:27320/73‑1 (MQ=255)                                                                                                                                               aCGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGc         >  5:54058/1‑146 (MQ=255)                                                                                                                                                cGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGa     <  8:80599/149‑1 (MQ=255)                                                                                                                                                   cACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGAc    <  3:331382/147‑1 (MQ=255)                                                                                                                                                   cACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGAc    >  4:331382/1‑147 (MQ=255)                                                                                                                                                    aCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTg  <  6:54058/148‑1 (MQ=255)                                                                                                                                                    aCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTg  >  2:100571/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GATTACGTGTTGGTGGCTATCGGCCGTCGCCCTTATACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTG  >  NC_002947/6116587‑6116881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.