New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6116735 =	36 (0.680)	5 (0.100)	5/242	NT	12.2%	coding (944/1401 nt)	lpd	dihydrolipoyl dehydrogenase
	?	NC_002947	6116768 =	38 (0.760)					coding (977/1401 nt)	lpd	dihydrolipoyl dehydrogenase

TACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGAGCAGCTCAAGGCCGAAGGACGTGCCTACAA  >  NC_002947/6116622‑6116915                                                                                                                                                   |                                                                                                                                                    agtcttgcccacggtggccatctccgggcgggtatagatcacgccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGAc                                                                                                                                                    >  7:286183‑M1/114‑148 (MQ=255)    aaaaGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAg                                                                                                                                                >  3:155361/1‑149 (MQ=255)       aGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCgg                                                                                                                                             >  8:243146/1‑149 (MQ=255)        gggCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGt                                                                                                                                            <  5:162042/149‑1 (MQ=255)            tAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGACGCGGTGGcc                                                                                                                                        >  2:331086/1‑149 (MQ=255)            tAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGcc                                                                                                                                        >  2:237878/1‑149 (MQ=255)            tAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGcc                                                                                                                                        >  4:128997/1‑149 (MQ=255)                     aaaGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                                                               <  1:342450/149‑1 (MQ=255)                     aaaGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                                                               >  5:309928/1‑149 (MQ=255)                                   gAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGc                                                                                                                   >  3:2767/1‑147 (MQ=255)                                    aaGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAg                                                                                                                <  1:309464/149‑1 (MQ=255)                                    aaGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAg                                                                                                                <  2:51899/149‑1 (MQ=255)                                    aaGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTAACGAACGCATCGCCGGCAAg                                                                                                                >  3:8437/1‑149 (MQ=255)                                           gccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGa                                                                                                                                                     >  6:224078‑M1/72‑105 (MQ=255)                                           gccagggatgaggttgtagttgacctcgtggggcttgccggcgatgcgttcgatacaggccaccgcttcgtCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGa                                                                                                                                                     <  5:224078‑M1/34‑1 (MQ=255)                                             aGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAg                                                                                                       <  4:2767/149‑1 (MQ=255)                                              gcgcGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAgg                                                                                                      <  1:237878/149‑1 (MQ=255)                                               cgcgGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGt                                                                                                     <  4:8437/149‑1 (MQ=255)                                                    cATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACt                                                                                                <  5:168939/149‑1 (MQ=255)                                                           aacaacGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAAcc                                                                                          >  5:229945/1‑148 (MQ=255)                                                                cGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGt                                                                                                                                     >  1:102719/1‑100 (MQ=255)                                                                cGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGt                                                                                                                                     <  2:102719/100‑1 (MQ=255)                                                                     accaccGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTc                                                                                        <  6:138501/140‑1 (MQ=255)                                                                     accaccGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTc                                                                                        >  5:138501/1‑140 (MQ=255)                                                                        accGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTg                                                                            <  6:229945/149‑1 (MQ=255)                                                                          cGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGAt                                                                          <  7:243146/149‑1 (MQ=255)                                                                                      ccGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGATGGCGCACAACGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCACCACGAGGTCAACTACAACCTCATCCCTGGCGAGATCTATAcccgccc                                                              >  8:190659/1‑149 (MQ=255)                                                                                             tCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATg                                                       <  4:155361/149‑1 (MQ=255)                                                                                             tCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATg                                                       >  7:80599/1‑149 (MQ=255)                                                                                                 ggTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                                                               >  4:27320/1‑73 (MQ=255)                                                                                                 ggTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGaa                                                                                                                               <  3:27320/73‑1 (MQ=255)                                                                                                            aCGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGc                                           >  5:54058/1‑146 (MQ=255)                                                                                                             cGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGa                                       <  8:80599/149‑1 (MQ=255)                                                                                                                gtcttcggccttgtgcgccagcattgggcccgaagACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACt                                     >  7:286183‑M2/36‑148 (MQ=255)                                                                                                                cACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGAc                                      <  3:331382/147‑1 (MQ=255)                                                                                                                cACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGAc                                      >  4:331382/1‑147 (MQ=255)                                                                                                                 tcttcggccttgtgcgccagcattgggcccgaagACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGc                                                                               <  5:224078‑M2/71‑1 (MQ=255)                                                                                                                 tcttcggccttgtgcgccagcattgggcccgaagACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGc                                                                               >  6:224078‑M2/35‑105 (MQ=255)                                                                                                                 aCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTg                                    <  6:54058/148‑1 (MQ=255)                                                                                                                 aCTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTg                                    >  2:100571/1‑148 (MQ=255)                                                                                                                  cttcggccttgtgcgccagcattgggcccgaagACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGga                                                           <  5:42709‑M2/91‑1 (MQ=255)                                                                                                                  cttcggccttgtgcgccagcattgggcccgaagACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGga                                                           >  6:42709‑M2/34‑124 (MQ=255)                                                                                                                   TTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAag                                 <  4:304217‑M1/149‑1 (MQ=255)                                                                                                                     CGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGTCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAaga                                >  3:128997‑M1/1‑148 (MQ=255)                                                                                                                      GGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCGAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAagag                               <  8:31612‑M1/148‑1 (MQ=255)                                                                                                                         cccAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGagcagc                           >  1:213708/1‑149 (MQ=255)                                                                                                                          ccAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGagcagc                           >  8:12813/1‑148 (MQ=255)                                                                                                                              tGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGAGCAGCTCAAg                      >  1:302015/1‑149 (MQ=255)                                                                                                                                    cgcACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCGCACGAGGTCAACTACAACCTCATCCCTGGCGTTATCTATACCCGCCCGGAGATGGCCACCGTTGGCAAGACTGAAGAGCAGCTCAAGTCCGaa                <  7:190659/149‑1 (MQ=255)                                                                                                                                        caAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGAGCAGCTCAAGGCCGAAGGAc            <  3:304217/149‑1 (MQ=255)                                                                                                                                          aGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCTGAGATGGCCACCGTGGGCAAGACTGAAGAGCAGCTCAAGGCCGAAGGACGt          <  2:302015/149‑1 (MQ=255)                                                                                                                                           ggCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGa                                       <  2:349528/119‑1 (MQ=255)                                                                                                                                           ggCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGa                                       >  1:349528/1‑119 (MQ=255)                                                                                                                                                 agACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCa                                                   >  4:337546‑M2/3‑101 (MQ=255)                                                                                                                                                 agACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCa                                                   <  3:337546‑M2/99‑1 (MQ=255)                                                                                                                                                  gACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGAGCAGCTCAAGGCCGAAGGACGTGCCTACaa  <  6:309928‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TACAAAAGGGCTAAACCTGGAAAGCGTGGGCCTGGAAGCCGACAAGCGCGGCATGCTCAACAACGAGCACCACCGTACCTCAGTGCCGGGTGTCTGGGTGATTGGCGACGTCACTTCGGGCCCAATGCTGGCGCACAAGGCCGAAGACGAAGCGGTGGCCTGTATCGAACGCATCGCCGGCAAGCCCCACGAGGTCAACTACAACCTCATCCCTGGCGTGATCTATACCCGCCCGGAGATGGCCACCGTGGGCAAGACTGAAGAGCAGCTCAAGGCCGAAGGACGTGCCTACAA  >  NC_002947/6116622‑6116915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.