New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1137997 =	40 (0.760)	3 (0.060)	3/240	NT	7.6%	coding (473/930 nt)	arcC	carbamate kinase
	?	NC_002947	1138051 =	35 (0.700)					coding (419/930 nt)	arcC	carbamate kinase

GGATGCCGCCACCGCCTGCGCAAATCACGATGCTGCTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGTTGCCCAG  >  NC_002947/1137908‑1138199                                                                                                                                                |                                                                                                                                                     ggATGCCGCCACCGCCTGCGCAAATCACGATGCTGCTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTcc                                                                                                                                                 <  5:127109/149‑1 (MQ=255)  acgccaacgaccctgccttcaaggacccgaccaagttcatcggcccggtctacagcaaggaagaggccgagcgcctggccaaggaaaaGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCt                                                                                                                                                >  8:132107‑M1/89‑149 (MQ=255)         ccACCGCCTGCGCAAATCACGATGCTGCTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAg                                                                                                                                         <  2:218332/149‑1 (MQ=255)              gCCTGCGCAAATCACGATGCTGCTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCt                                                                                                                                    >  2:253884/1‑149 (MQ=255)                    gcAAATCACGATGCTGCTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCct                                                                                                                              >  6:155247/1‑149 (MQ=255)                               tgctgcTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTg                                                                                                                   <  4:155822/149‑1 (MQ=255)                                gctgctTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCctct                                                                                                                            >  5:111055/1‑139 (MQ=255)                                gctgctTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCctct                                                                                                                            <  6:111055/139‑1 (MQ=255)                                    ctTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGAc                                                                                                              >  2:317606/1‑149 (MQ=255)                                     ttttttCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCg                                                                                                                                  >  7:24955/1‑128 (MQ=255)                                     ttttttCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCg                                                                                                                                  <  8:24955/128‑1 (MQ=255)                                     ttttttCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGAcc                                                                                                             >  7:35241/1‑149 (MQ=255)                                          tCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGc                                                                                                         <  1:317606/148‑1 (MQ=255)                                             agcagcCACTTGATCGGGGTAATTTCGACCATGCGCTTGGGTTTGGGGCTGGCTCCCAGGCGGCGGAACTTGTCGCCGCCGGCCTTGACCACCCTGCCCTTTTCCTTGGCCAGTCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGAt                                                                                                     <  1:53428/149‑1 (MQ=255)                                                 gcCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAAc                                                                                                 <  1:253884/149‑1 (MQ=255)                                                    aCTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGc                                                                                                         >  7:167222/1‑138 (MQ=255)                                                    aCTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGc                                                                                                         <  8:167222/138‑1 (MQ=255)                                                            gggCGAATTTCGAAGCTGCGCTTGGGTTTCGGGCTGGCTCCCACGCGGCCGCACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCGCGGCCTCTTCCTTGCTCTAGCCCGGGCCGATGAACTTGGTCggg                                                                                        <  8:154927/147‑1 (MQ=255)                                                              gCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCAGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCt                                                                                    >  3:269746/1‑149 (MQ=255)                                                                       gAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACt                                                                                                <  8:26515/128‑1 (MQ=255)                                                                       gAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACt                                                                                                >  7:26515/1‑128 (MQ=255)                                                                       gAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCAGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCa                                                                            <  4:269746/148‑1 (MQ=255)                                                                        aaGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAgg                                                                          <  1:116623/149‑1 (MQ=255)                                                                         aGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAggg                                                                         <  5:155247/149‑1 (MQ=255)                                                                                   aggaaaagggctgggtggtcaaggccgacggcgacaagtaccgccgcgtggtagccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGt                                                               >  8:132107‑M2/62‑149 (MQ=255)                                                                                      tttCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGtcca                                                            >  8:269596/1‑149 (MQ=255)                                                                                       ttCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAgg                                                                          >  4:324429/1‑134 (MQ=255)                                                                                       ttCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAgg                                                                          <  3:324429/134‑1 (MQ=255)                                                                                        tCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGtccac                                                           <  4:153017/148‑1 (MQ=255)                                                                                          gggctgggtggtcaaggccgacggcgacaagtaccgccgcgtggtagccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTcc                                                                                     <  8:256311‑M2/66‑1 (MQ=255)                                                                                                GCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTccacttccactt                                                   >  7:269596‑M1/1‑148 (MQ=255)                                                                                                 gtggtcaaggccgacggcgacaagtaccgccgcgtggtagccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTgg                                                 <  7:132107‑M2/102‑1 (MQ=255)                                                                                                  tACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTggg                                                >  8:162670/1‑149 (MQ=255)                                                                                                     cACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCggg                                                                                        >  6:154873/1‑106 (MQ=255)                                                                                                     cACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCggg                                                                                        <  5:154873/106‑1 (MQ=255)                                                                                                                  ttGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGaa                                >  8:121831/1‑149 (MQ=255)                                                                                                                       gCCGTCGGCCTTAACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAggg                                                                         <  7:110412/103‑1 (MQ=255)                                                                                                                       gCCGTCGGCCTTAACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAggg                                                                         >  8:110412/1‑103 (MQ=255)                                                                                                                           tCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTc                       >  8:77671/1‑149 (MQ=255)                                                                                                                                cTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAgg                  >  8:151548/1‑149 (MQ=255)                                                                                                                                     ccaccCAGCCCTTATCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCcag              >  2:44896/1‑148 (MQ=255)                                                                                                                                       accCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGaa                    <  1:113426/140‑1 (MQ=255)                                                                                                                                       accCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGaa                    >  2:113426/1‑140 (MQ=255)                                                                                                                                       accCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCcagcag           <  7:77671/149‑1 (MQ=255)                                                                                                                                         ccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCaa                                         >  6:21520‑M2/8‑117 (MQ=255)                                                                                                                                         ccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCaa                                         <  5:21520‑M2/110‑1 (MQ=255)                                                                                                                                         ccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGt         >  5:362939‑M2/8‑149 (MQ=255)                                                                                                                                         ccagcccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGt         >  3:81852‑M2/8‑149 (MQ=255)                                                                                                                                             cccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGTTGcc     <  7:121831‑M2/146‑1 (MQ=255)                                                                                                                                              ccTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGTTGcc     >  7:180473‑M2/3‑148 (MQ=255)                                                                                                                                                ttttCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGTTGCCCAg  >  3:142094/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     GGATGCCGCCACCGCCTGCGCAAATCACGATGCTGCTTTTTTCCAGCAGCCACTTGATCGGGCGAATTTCGAAGATGCGCTTGGGTTTCGGGCTGGCTACCACGCGGCGGTACTTGTCGCCGTCGGCCTTGACCACCCAGCCCTTTTCCTTGGCCAGGCGCTCGGCCTCTTCCTTGCTGTAGACCGGGCCGATGAACTTGGTCGGGTCCTTGAAGGCAGGGTCGTTGGCGTCCACTTCCACTTGGGTGAGCAAGGTGGCGAACGGCACCTCGAAGGCCAGCAGGTTGCCCAG  >  NC_002947/1137908‑1138199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.