New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3026426 =	32 (0.610)	4 (0.080)	5/244	NT	11.0%	coding (210/1800 nt)	PP_2641	iron‑sulfur cluster‑binding protein
	?	NC_002947	3026446 =	34 (0.670)					coding (190/1800 nt)	PP_2641	iron‑sulfur cluster‑binding protein

ATGTCGCTGCAGGCGTGGCTCTGGCACAGCAACATCTCGTCGGCGGCCAAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGATTG  >  NC_002947/3026298‑3026588                                                                                                                                                       |                                                                                                                                               aTGTCGCTGCAGGCGTGGCTCTGGCACAGCAACATCTCGTCGGCGGCCAAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCa                                                                                                                                                <  7:154115/149‑1 (MQ=255)        tGCAGGCGTGGCTCTGGCACAGCAACATCTCGTCGGCGGCCGAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAg                                                                                                                                         >  6:108759/1‑149 (MQ=255)          cAGGCGTGGCTCTGGCACAGCAACATCTCGTCGGCGGCCAAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAgg                                                                                                                                        <  3:171520/148‑1 (MQ=255)                        gCACAGCAACATCTCGTCGGCGGCCAAGGGATAGGACGGCGGCGGTGTGTCCGCAACCCGCTGCTAGTCCTCATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGc                                                                                                                         >  1:242652/1‑149 (MQ=255)                           caGCAACATCTCGTCGGCGGCCAAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTgg                                                                                                                      <  8:42094/149‑1 (MQ=255)                                      ttgaattgtcgccctcgggcaaaaccttcgaagccagccaggagctgctgctcgatgccatgctcgccagcggcctgccggtacccttttcctgccgcaggcgccgcggcggcAGGAAAAggg                                                                                                                                       <  8:6030‑M2/10‑1 (MQ=255)                                      ttgaattgtcgccctcgggcaaaaccttcgaagccagccaggagctgctgctcgatgccatgctcgccagcggcctgccggtacccttttcctgccgcaggcgccgcggcggcAGGAAAAggg                                                                                                                                       >  7:6030‑M2/114‑123 (MQ=255)                                         cggcggCCAAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGCGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATc                                                                                                         >  2:268866/1‑148 (MQ=255)                                                    ggATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTc                                                                                             >  3:259575/1‑149 (MQ=255)                                                      aTAGGACGGCGGCGGTGTGTCCGCATCACGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCct                                                                                           >  2:200630/1‑149 (MQ=255)                                                               ttcgaagccagccaggagctgctgctcgatgccatgctcgccagcggcctgccggtacccttttcctGCCGCAGGCGCC‑GCGGCGGCAGGaaaa                                                                                                                                          <  6:289359‑M1/27‑1 (MQ=255)                                                               ttcgaagccagccaggagctgctgctcgatgccatgctcgccagcggcctgccggtacccttttcctGCCGCAGGCGCC‑GCGGCGGCAGGaaaa                                                                                                                                          >  5:289359‑M1/68‑94 (MQ=255)                                                                       tgtCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGt                                                                           <  2:242652/148‑1 (MQ=255)                                                                         tCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGtttt                                                                        >  1:89529/1‑149 (MQ=255)                                                                            gCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGc                                                                                                                     <  1:83384/101‑1 (MQ=255)                                                                            gCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGc                                                                                                                     >  2:83384/1‑101 (MQ=255)                                                                            gCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGcc                                                                     >  1:80469/1‑149 (MQ=255)                                                                               tCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCAGGCTGGCTAGGAAGGATTTGccc                                                                    >  3:258430/1‑147 (MQ=255)                                                                                 ccGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAgg                                                                <  2:89529/149‑1 (MQ=255)                                                                                 ccGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAg                                                                 <  2:80469/148‑1 (MQ=255)                                                                                     tgctTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGa                                                            <  4:259575/149‑1 (MQ=255)                                                                                      gctTGTCCTGATGCTGCCCTGAGACCACCTTGACCTTTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAg                                                                             >  1:57593/1‑132 (MQ=255)                                                                                      gctTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAg                                                                             <  2:57593/131‑1 (MQ=255)                                                                                           tCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAAtt                                                       >  1:340616/1‑148 (MQ=255)                                                                                               gATGCTGCCCTGAGCCCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCCGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACACTTCCATg                                                  >  4:103793/1‑149 (MQ=255)                                                                                                      cccTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTg                                             <  7:68600/147‑1 (MQ=255)                                                                                                           agaCCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCt                                       <  5:108759/148‑1 (MQ=255)                                                                                                             accaccTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTg                                    >  3:146025/1‑149 (MQ=255)                                                                                                                accttgacc‑ttgCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCAt                                 >  5:81090/1‑149 (MQ=255)                                                                                                                  cttgacc‑ttgCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCAt                                 >  7:74577/1‑147 (MQ=255)                                                                                                                        cccttttcctGCCGCCGCGGCG‑CCTGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCaa                                                    <  8:6030‑M1/113‑1 (MQ=255)                                                                                                                        cccttttcctGCCGCCGCGGCG‑CCTGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCaa                                                    >  7:6030‑M1/11‑123 (MQ=255)                                                                                                                        c‑ttgCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCt                         >  7:55286/1‑149 (MQ=255)                                                                                                                          ttgCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCAt                                 <  8:313893/140‑1 (MQ=255)                                                                                                                          ttgCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCAt                                 >  7:313893/1‑140 (MQ=255)                                                                                                                            ttttcctgccgccgcggcgcctgcggcAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGaa                                                                              >  5:289359‑M2/28‑94 (MQ=255)                                                                                                                            ttttcctgccgccgcggcgcctgcggcAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGaa                                                                              <  6:289359‑M2/67‑1 (MQ=255)                                                                                                                             cACGAGCCGCAGGCGCC‑GCAGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCggg                     >  2:152458/1‑149 (MQ=255)                                                                                                                              tgccGCCGC‑GGCGCCTGCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCgggg                    <  6:332803‑M1/145‑1 (MQ=255)                                                                                                                              aCGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGa                               <  4:272775/138‑1 (MQ=255)                                                                                                                              aCGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGa                               >  3:272775/1‑138 (MQ=255)                                                                                                                              aCGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCgggg                    >  7:238123/1‑149 (MQ=255)                                                                                                                               cGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGc                   <  2:340616/149‑1 (MQ=255)                                                                                                                                ccGCCGC‑GGCGCCTGCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGc                   <  8:114668‑M1/146‑1 (MQ=255)                                                                                                                                   CCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAAt               <  8:69025‑M1/149‑1 (MQ=255)                                                                                                                                   CCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAAt               <  8:33108‑M1/149‑1 (MQ=255)                                                                                                                                      CAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGa            >  8:238123‑M1/1‑149 (MQ=255)                                                                                                                                       aGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAg           >  8:149808/1‑149 (MQ=255)                                                                                                                                             c‑gcgGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCggg                     >  3:100873/1‑133 (MQ=255)                                                                                                                                             c‑gcgGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCggg                     <  4:100873/133‑1 (MQ=255)                                                                                                                                               gcggcgGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGAt    <  7:33108/149‑1 (MQ=255)                                                                                                                                               gcggcgGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGAt    <  4:146025/149‑1 (MQ=255)                                                                                                                                                cggcggCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGAtt   <  8:74577/149‑1 (MQ=255)                                                                                                                                                 ggcggcAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGAttg  <  5:332803/149‑1 (MQ=255)                                                                                                                                                   cggcAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGAttg  <  1:152458‑M2/143‑1 (MQ=255)                                                                                                                                                    ggcAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCAt                                 >  3:180343‑M2/4‑115 (MQ=255)                                                                                                                                                    ggcAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCAt                                 <  4:180343‑M2/112‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                               ATGTCGCTGCAGGCGTGGCTCTGGCACAGCAACATCTCGTCGGCGGCCAAGGGATAGGACGGCGGCGGTGTGTCCGCATCCCGCTGCTTGTCCTGATGCTGCCCTGAGACCACCTTGACC‑TTGCACGAGCCGCAGGCGCC‑GCGGCGGCAGGAAAAGGGTACCGGCAGGCCGCTGGCGAGCATGGCATCGAGCAGCAGCTCCTGGCTGGCTTCGAAGGTTTTGCCCGAGGGCGACAATTCAATGACGTGGCGGCTTTGCATGAGCACCTCGGGGCAAATGGAGGTTCGATTG  >  NC_002947/3026298‑3026588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.