New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4591748 =	32 (0.610)	3 (0.060)	3/246	NT	8.8%	coding (7/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
	?	NC_002947	4591788 =	31 (0.610)					coding (47/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha

CGCGCTTTCCTGGAAAAACGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAGCTACCTG  >  NC_002947/4591680‑4591936                                                                                                             |                                                                                                                                                     cgcgcTTTCCTGGAAAAACGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGcc                                                                                                                          >  1:43314/1‑137 (MQ=255) cgcgcTTTCCTGGAAAAACGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGcc                                                                                                                          <  2:43314/137‑1 (MQ=255) cgcgcTTTCCTGGAAAAACGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATgg                                                                                                                <  7:115910/147‑1 (MQ=255)           tGGAAAAACGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGCAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTg                                                                                                    >  3:191404/1‑149 (MQ=255)                  aCGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGt                                                                                             >  1:114130/1‑149 (MQ=255)                  aCGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGt                                                                                             <  2:114130/149‑1 (MQ=255)                      ggtcaggcccatggccttggcggtgcgcatcacccggcaggcgatttCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATc                                                                                                                                                  <  8:203773‑M1/45‑1 (MQ=255)                      ggtcaggcccatggccttggcggtgcgcatcacccggcaggcgatttCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATc                                                                                                                                                  >  7:203773‑M1/48‑92 (MQ=255)                       gccCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGca                                                                                          >  7:47413/1‑147 (MQ=255)                         cctgcctgGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAgc                                                                                      >  7:223254/1‑149 (MQ=255)                          ctgcctgGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGAcc                                                                                                        <  4:339058/130‑1 (MQ=255)                               tgGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCacc                                                                                >  2:112457/1‑149 (MQ=255)                                        gTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGAc                                                                       >  8:238689/1‑149 (MQ=255)                                                gaagGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCaccgacc                                                                            >  3:279337/1‑136 (MQ=255)                                                gaagGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCaccgacc                                                                            <  4:279337/136‑1 (MQ=255)                                                    gAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGt                                                                                                   <  3:210977/109‑1 (MQ=255)                                                    gAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGt                                                                                                   >  4:210977/1‑109 (MQ=255)                                                    gAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGc                                                           >  2:124670/1‑149 (MQ=255)                                                       ccGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCcgc                                                        <  4:191404/149‑1 (MQ=255)                                                             ccATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGc                                                                                                                     <  7:226713/82‑1 (MQ=255)                                                             ccATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGc                                                                                                                     >  8:226713/1‑82 (MQ=255)                                                               aTGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGa                                                >  5:143772/1‑149 (MQ=255)                                                                tGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGAc                                               <  8:223254/149‑1 (MQ=255)                                                                gatttcgccgcggttggcgaccagcagggtggtcaaagcggggcgAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGAcc                                                                                                        <  8:203773‑M2/47‑1 (MQ=255)                                                                gatttcgccgcggttggcgaccagcagggtggtcaaagcggggcgAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGAcc                                                                                                        >  7:203773‑M2/46‑92 (MQ=255)                                                                      gccgcggttggcgaccagcagggtggtcaaagcggggcgAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCcgc                                         >  7:181613‑M2/40‑149 (MQ=255)                                                                       CCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTc                                                                <  4:268231‑M1/125‑1 (MQ=255)                                                                       CCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTc                                                                >  3:268231‑M1/1‑125 (MQ=255)                                                                         ccGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTc                                      >  5:139822/1‑149 (MQ=255)                                                                            cTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGAc                                   <  1:124670/149‑1 (MQ=255)                                                                                gACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTgg                               >  8:126248/1‑149 (MQ=255)                                                                                 accaccCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCac                                                                                 <  8:236505/98‑1 (MQ=255)                                                                                 accaccCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTggg                              >  3:40806/1‑149 (MQ=255)                                                                                  ccaccCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGggc                             >  5:211442/1‑149 (MQ=255)                                                                                  ccaccCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGggc                             >  6:291945/1‑149 (MQ=255)                                                                                             gTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCcgcg                                        <  5:232218/127‑1 (MQ=255)                                                                                             gTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCcgcg                                        >  6:232218/1‑127 (MQ=255)                                                                                              tCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCt                 >  8:309961/1‑149 (MQ=255)                                                                                                     ccGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGaaa          <  5:291945/149‑1 (MQ=255)                                                                                                     ccGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGa            >  7:93403/1‑147 (MQ=255)                                                                                                      cgcgGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAg         >  6:248637/1‑149 (MQ=255)                                                                                                        cggcgAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCg                                                 <  8:114222/107‑1 (MQ=255)                                                                                                         ggcgAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAGCTa      <  6:139822‑M2/145‑1 (MQ=255)                                                                                                           cgAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAGCTAcc    <  6:143772‑M2/147‑1 (MQ=255)                                                                                                            gAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAGCTACCt   >  3:28962‑M2/2‑149 (MQ=255)                                                                                                            gAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAGCTACCt   >  2:246956‑M2/2‑149 (MQ=255)                                                                                                             aaaTCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCCCCAAGGCTGCCGAAAGCTACctg  >  3:179693/1‑149 (MQ=255)                                                                                                             |                                                                                                                                                     CGCGCTTTCCTGGAAAAACGCCGCCCTGCCTGGCAAACCGTTGACAAGAAGGAGCCGCGCCCATGAGCCGCCCCGCTTTGACCACCCTGCTGGTCGCCAACCGCGGCGAAATCGCCTGCCGGGTGATGCGCACCGCCAAGGCCATGGGCCTGACCACTGTCGCCGTGCACAGCGCCACCGACCGTGACGCCCGTCACAGCCGCGAAGCCGACATCCGCGTCGACCTGGGCGGCACCAAGGCTGCCGAAAGCTACCTG  >  NC_002947/4591680‑4591936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.