New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4722314	49 (0.930)	4 (0.080)	4/242	NT	7.5%	coding (1250/1905 nt)	htpG	chaperone protein HtpG
	?	NC_002947	= 4722346	52 (1.030)					coding (1218/1905 nt)	htpG	chaperone protein HtpG

GGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCAGCATGTCCAGC  >  NC_002947/4722213‑4722478                                                                                                                                      |                                                                                                                                      ggCTGTTCTTGACCTGGGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGc                                                                                                                            >  4:40226/1‑145 (MQ=255) ggCTGTTCTTGACCTGGGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGc                                                                                                                            <  3:40226/145‑1 (MQ=255)    tGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTtc                                                                                                                    >  3:120325/1‑149 (MQ=255)                     tACGACTCGCCGGTGAGATAGTAGATATTGTCCTGACATTCCTTGGCGAGGGCCAGGTAGTCGTCCAGGGAGACGCTCTGCTCGCCGCTGTCGTCATGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTc                                                                                                   >  7:180278/1‑149 (MQ=255)                        gACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCttgttg                                                                                                           <  1:296805/138‑1 (MQ=255)                        gACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCttgttg                                                                                                           >  2:296805/1‑138 (MQ=255)                        gACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTc                                                                                                >  2:301125/1‑149 (MQ=255)                              cgggTGAGATAGTAGTTCTTGTCCTGACCTTCCTTGGGGGGGGCCAGGTAGTCGGCCAGGGCGACTCTCTGCTCGCCGGTGTCGTCCTGGGTGGACGCAAAGCGCAGCATACCGGA‑GATTTTGTCCTTGTTGGCGAAGTCTTCGGCCgg                                                                                          <  2:346717/147‑1 (MQ=255)                                     gaTAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCg                                                                                               <  6:226153/137‑1 (MQ=255)                                     gaTAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCg                                                                                               >  5:226153/1‑137 (MQ=255)                                        agtagATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCttt                                                                                 >  8:109902/1‑148 (MQ=255)                                         gtagATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCa                                                                               <  6:197405/149‑1 (MQ=255)                                          tagATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGCAGATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCa                                                                               <  1:248655/149‑1 (MQ=255)                                          tagATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCttt                                                                                 >  2:248655/1‑146 (MQ=255)                                                   tCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGAc                                                                      >  7:172260/1‑148 (MQ=255)                                                   tCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGAc                                                                      <  8:172260/148‑1 (MQ=255)                                                   tCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCACCAGACCGGC‑GATTTTCTCCTTGATGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGAcc                                                                     >  7:153397/1‑149 (MQ=255)                                                    ccTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGAcc                                                                     >  8:109701/1‑148 (MQ=255)                                                        aCCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGaa                                                                  <  4:120325/147‑1 (MQ=255)                                                             gcttGGCTGGGGCCAGGTAGTCGGCAAGGGCGACGCTCTGCTCGCCGATGTAGTCCTGTTTGTACGCAAAGCTCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCTGCCGTGCCCTCTTTCAGCACCTGACCTAAGtttt                                                             <  8:180278/146‑1 (MQ=255)                                                              cttGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAATTTTTc                                                           >  5:329032/1‑148 (MQ=255)                                                               ttGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTc                                                           >  6:155092/1‑147 (MQ=255)                                                                 ggCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCa                                                         <  5:133194/147‑1 (MQ=255)                                                                         ccAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTg                                               >  2:335611/1‑149 (MQ=255)                                                                            ggTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTcc                                                          <  3:193888/135‑1 (MQ=255)                                                                            ggTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTcc                                                          >  4:193888/1‑135 (MQ=255)                                                                             gTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCa                                                                               >  8:204712/1‑113 (MQ=255)                                                                             gTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCa                                                                               <  7:204712/113‑1 (MQ=255)                                                                                gTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTtc                                         <  2:26753/148‑1 (MQ=255)                                                                                   ggCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCgg                                     <  7:109701/149‑1 (MQ=255)                                                                                    gCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGttttt                                                            <  3:322338/125‑1 (MQ=255)                                                                                    gCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGttttt                                                            >  4:322338/1‑125 (MQ=255)                                                                                        gggCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGgttcg                                <  5:155092/149‑1 (MQ=255)                                                                                             aCGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGttctt                           <  1:301125/149‑1 (MQ=255)                                                                                              cGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAACTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGttcttc                          <  6:329032/149‑1 (MQ=255)                                                                                               gCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTTTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTg                                               <  1:91419/127‑1 (MQ=255)                                                                                               gCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCg                         >  5:64608/1‑149 (MQ=255)                                                                                               gCTCTGCTCGCCGCTGTCGACCTGGGAGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTACAGCACCTCACCGAAGTATTTCCAGAAGCCCTTg                                               >  2:91419/1‑127 (MQ=255)                                                                                                ctctGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCagcagagcgtcgccctggccgactacctggcccgcgccaaggaaggtcaggacaagatctactatctcaccggcgagtcgtacgcgcaggtcaagaaca                                    >  7:61834‑M2/1‑39 (MQ=255)                                                                                                ctctGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCagcagagcgtcgccctggccgactacctggcccgcgccaaggaaggtcaggacaagatctactatctcaccggcgagtcgtacgcgcaggtcaagaaca                                    <  8:61834‑M2/138‑100 (MQ=255)                                                                                                 tctGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCagcagagcgtcgccctggccgactacctggcccgcgccaaggaaggtcaggacaagatctactatctcaccggcgagtcgtacgcgcaggtcaagaacagcccgcacctg                         <  5:336508‑M2/148‑111 (MQ=255)                                                                                                 tctGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGccc                                                  <  5:248047/122‑1 (MQ=255)                                                                                                 tctGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGccc                                                  >  6:248047/1‑122 (MQ=255)                                                                                                     cTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGc                    <  6:64608/148‑1 (MQ=255)                                                                                                          cgcTGTCGTCCTGGGTGGACGCAAAGCGCagcagagcgtcgccctggccgactacctggcccgcgccaaggaaggtcaggacaagatctactatctcaccggcgagtcgtacgcgcaggtcaagaacagcccgcacctggaagtcttcc               >  6:336508‑M2/1‑29 (MQ=255)                                                                                                            cTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCg                                      <  5:321973/123‑1 (MQ=255)                                                                                                            cTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCg                                      >  6:321973/1‑123 (MQ=255)                                                                                                                 gtcCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCAGCATGt       >  7:261042/1‑149 (MQ=255)                                                                                                                     tGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCAGCATGTCCAg   >  3:249568/1‑149 (MQ=255)                                                                                                                         tGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCt                                                 >  4:1446/1‑99 (MQ=255)                                                                                                                         tGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCa             <  6:317832/135‑1 (MQ=255)                                                                                                                         tGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCa             >  5:317832/1‑135 (MQ=255)                                                                                                                            aCGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCAGCATGTCCAGc  <  7:284298/143‑1 (MQ=255)                                                                                                                            aCGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCAGCATGTCCAGc  >  8:284298/1‑143 (MQ=255)                                                                                                                                aaaGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCg                                      <  7:247033/103‑1 (MQ=255)                                                                                                                                aaaGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCg                                      >  8:247033/1‑103 (MQ=255)                                                                                                                                aaaGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGc                        <  6:186299/117‑1 (MQ=255)                                                                                                                                aaaGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGc                        >  5:186299/1‑117 (MQ=255)                                                                                                                                      |                                                                                                                                      GGCTGTTCTTGACCTGCGCGTACGACTCGCCGGTGAGATAGTAGATCTTGTCCTGACCTTCCTTGGCGCGGGCCAGGTAGTCGGCCAGGGCGACGCTCTGCTCGCCGCTGTCGTCCTGGGTGGACGCAAAGCGCAGCAGACCGGC‑GATTTTCTCCTTGTTGGCGAAGTCTTCGGCCGGGCCCTCTTTCAGCACCTGACCGAAGTTTTTCCAGAAGCCCTTGTATTTCTCGGGTTCGTTCTTCGCCAGCTTCTCCAGCATGTCCAGC  >  NC_002947/4722213‑4722478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.