New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5120033	31 (0.590)	3 (0.060)	3/240	NT	8.8%	coding (223/558 nt)	PP_4506	nitroreductase family protein
	?	NC_002947	= 5120053	33 (0.660)					coding (203/558 nt)	PP_4506	nitroreductase family protein

CGCACAGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATT  >  NC_002947/5119911‑5120192                                                                                                                                               |                                                                                                                                            cgcACAGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTgctgca                                                                                                                                       <  7:39035‑M2/149‑7 (MQ=255)     caGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTgctg                                                                                                                                         <  6:6314‑M2/143‑5 (MQ=255)     caGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTgctg                                                                                                                                         >  5:6314‑M2/1‑139 (MQ=255)        cccGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACgg                                                                                                                                    >  6:277238/1‑145 (MQ=255)        cccGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACgg                                                                                                                                    <  5:277238/145‑1 (MQ=255)           gccgccAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGc                                                                                                                             <  7:120075/149‑1 (MQ=255)                 aGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAg                                                                                                                       <  8:39035/149‑1 (MQ=255)                           cGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGc                                                                                                             >  8:46335/1‑149 (MQ=255)                            ggACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGc                                                                                                             <  7:46335/148‑1 (MQ=255)                            ggACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGc                                                                                                             <  7:32668/148‑1 (MQ=255)                                   ggCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTcgcg                                                                                                     >  1:127750/1‑149 (MQ=255)                                     cACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTgctgcac                                                                                                                                      >  8:259889‑M2/1‑107 (MQ=255)                                     cACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTgctgcac                                                                                                                                      <  7:259889‑M2/114‑8 (MQ=255)                                        cTTGAAGTGGTCCTGCACCCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGACCTTGTGCTGCACGGCTTCGGCGAACAGATCACCCAGATTCTCGCGGCCCt                                                                                                >  3:217196/1‑149 (MQ=255)                                           gAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTg                                                                                               <  2:127750/147‑1 (MQ=255)                                                    cTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATgg                                                                                    >  3:197624/1‑149 (MQ=255)                                                    cTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATgg                                                                                    <  3:174202/149‑1 (MQ=255)                                                       cAACCTGGCCAGCACCACGATCATCAACGTCGCACGCAGCTGCATCGAACGGGCCTTGTCCAGTGCATCCTGGCTTGAATCGCACTTGTGCTGCACGGCTTCGGCGAACAGCTAACCCAGCTTCTCTCGGCCCTGGCCTTCGATGGTaa                                                                                 <  4:217196/149‑1 (MQ=255)                                                            tGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGaaaa                                                                            >  5:35686/1‑149 (MQ=255)                                                                caccaccacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGcc                                                                        >  6:41860/1‑149 (MQ=255)                                                                    accacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACgg                                                                    <  7:259248/149‑1 (MQ=255)                                                                     ccacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGc                                                                   >  5:103414/1‑149 (MQ=255)                                                                      cacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGc                                                                                                             >  3:149911/1‑106 (MQ=255)                                                                      cacGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGc                                                                                                             <  4:149911/106‑1 (MQ=255)                                                                            cAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCt                                                            >  1:186271/1‑149 (MQ=255)                                                                                aaCGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGcc                                                        >  3:105651/1‑149 (MQ=255)                                                                                aaCGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGcc                                                        <  4:105651/149‑1 (MQ=255)                                                                                      gcCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGcc                                                        >  8:138525/1‑143 (MQ=255)                                                                                      gcCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGcc                                                        <  7:138525/143‑1 (MQ=255)                                                                                        ccGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCg                                                                 <  2:91164/132‑1 (MQ=255)                                                                                        ccGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCg                                                                 >  1:91164/1‑132 (MQ=255)                                                                                                   tCGCACGGGCCTTGTCCAGGTCAGCCTGCCTTGCATCGCCCTTGTGCTGCACGGGTTCGTGGAACAGCTCACCCAGCTTCTCGCGGCCCTGCCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGTCCGTGATCCGGGGCGCGCAgg                                     <  8:183650/149‑1 (MQ=255)                                                                                                             cTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGa                           <  5:41860/149‑1 (MQ=255)                                                                                                                 tCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAg                       >  6:241388/1‑149 (MQ=255)                                                                                                                   cAGTGCAGCCTGGCTGGCATCGCCCTTGTgctgcactggacaaggcccgtgcgatgccgctgcgggcgccgttgctgatcgtggtggtggccaggttgcaggaccacttcaaggtgcccaagtccgagcagcgcctggcggcgg                          >  6:166908‑M2/1‑29 (MQ=255)                                                                                                                   cAGTGCAGCCTGGCTGGCATCGCCCTTGTgctgcactggacaaggcccgtgcgatgccgctgcgggcgccgttgctgatcgtggtggtggccaggttgcaggaccacttcaaggtgcccaagtccgagcagcgcctggcggcgg                          <  5:166908‑M2/144‑116 (MQ=255)                                                                                                                   cAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAgc                      <  2:186271/148‑1 (MQ=255)                                                                                                                    aGTGCAGCCTGGCTGGCATCGCCCTTGTgctgcactggacaaggcccgtgcgatgccgctgcgggcgccgttgctgatcgtggtggtggccaggttgcaggaccccttcaaggtgccc                                                   <  4:216727‑M2/118‑91 (MQ=255)                                                                                                                                 tggcATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGggcg       >  5:124364/1‑149 (MQ=255)                                                                                                                                     aTCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCgg                                               >  4:202432/1‑105 (MQ=255)                                                                                                                                     aTCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCgg                                               <  3:202432/105‑1 (MQ=255)                                                                                                                                      tCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCAtt  >  6:227610/1‑149 (MQ=255)                                                                                                                                      tCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCAtt  <  5:241388/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            CGCACAGCCCGCCGCCAGGCGCTGCTCGGACTTGGGCACCTTGAAGTGGTCCTGCAACCTGGCCACCACCACGATCAGCAACGGCGCCCGCAGCGGCATCGCACGGGCCTTGTCCAGTGCAGCCTGGCTGGCATCGCCCTTGTGCTGCACGGCTTCGGCGAACAGCTCACCCAGCTTCTCGCGGCCCTGGCCTTCGATGGTAAGAAAACGCCACGGCCGCAGCTGGCCGTGATCCGGGGCGCGCAGGGCAGCCTGGAACAGCGCCTCGCGCTGGGCGGCATT  >  NC_002947/5119911‑5120192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.