New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5374504 =	53 (1.000)	4 (0.080)	3/244	NT	8.3%	coding (937/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	5374545 =	38 (0.750)					coding (896/1128 nt)	dnaJ	chaperone protein DnaJ

ACGCAGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTCACGCACGCTGATC  >  NC_002947/5374397‑5374691                                                                                                                                                     |                                                                                                                                                    aagcatttgtactgtgaagtgccgatcagctacaccgatgctgccctgggtggcgagctggaagtgccgaccctggatggtcgcgtgaagctgaagattccggaaggCACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGc                                                                                                                                                     <  2:303058‑M1/42‑1 (MQ=255) aagcatttgtactgtgaagtgccgatcagctacaccgatgctgccctgggtggcgagctggaagtgacgaccctggatggtcgcgtgaagctgaagattccggaaggCACCCTTGCCACGCAGACGGAACTGCTTTCCGGTCTGGGTGc                                                                                                                                                     <  7:104359‑M1/42‑1 (MQ=255) aCGCAGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGc                                                                                                                                                     >  5:90614/1‑149 (MQ=255) aCGCAGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGc                                                                                                                                                     >  2:268098/1‑149 (MQ=255)  cGCAGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGcc                                                                                                                                                    <  4:203436/149‑1 (MQ=255)     atttgtactgtgaagtgccgatcagctacaccgatgctgccctgggtggcgagctggaagtgccgaccctggatggtcgcgtgaagctgaagattccggaaggCACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTc                                                                                                                                                 >  1:303058‑M1/104‑149 (MQ=255)     aGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTc                                                                                                                                                 >  8:332062/1‑149 (MQ=255)     aGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTc                                                                                                                                                 <  6:90614/149‑1 (MQ=255)      tttgtactgtgaagtgccgatcagctacaccgatgctgccctgggtggcgagctggaagtgccgaccctggatggtcgcgtgaagctgaagattccggaaggCACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTcc                                                                                                                                                >  8:104359‑M1/103‑149 (MQ=255)              agcagcTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCtt                                                                                                                                        <  8:226806/149‑1 (MQ=255)                            aCGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGa                                                                                                                           <  1:268098/148‑1 (MQ=255)                                 gACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATcc                                                                                                                     <  5:27002/149‑1 (MQ=255)                                    tGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAgg                                                                                                                  <  7:332062/149‑1 (MQ=255)                                      agaTTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAgg                                                                                                                  <  3:276120/147‑1 (MQ=255)                                      agaTTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGAAATCTTCAGCTTCACGCGACCATCCAGGGt                                                                                                                >  5:282899/1‑149 (MQ=255)                                       gaTTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTc                                                                                                               >  7:62377/1‑149 (MQ=255)                                           gACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCa                                                                                                           >  4:330869/1‑149 (MQ=255)                                                gggTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGaa                                                                                                                                            >  6:154745/1‑111 (MQ=255)                                                gggTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGaa                                                                                                                                            <  5:154745/111‑1 (MQ=255)                                                   tttCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGc                                                                                                   >  8:306980/1‑149 (MQ=255)                                                      cTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTc                                                                                                 <  3:330869/148‑1 (MQ=255)                                                             cacaCGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGAAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCa                                                                                        <  6:282899/149‑1 (MQ=255)                                                              acacGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCg                                                                                                              >  8:272042/1‑127 (MQ=255)                                                              acacGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCg                                                                                                              <  7:272042/127‑1 (MQ=255)                                                                   gCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGgcag                                                                                  >  2:79835/1‑149 (MQ=255)                                                                       agcagGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATc                                                                              >  7:5110/1‑149 (MQ=255)                                                                       agcagGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCATCACGCGACCATCCAGGGTCGGCACTTCCAGCTAGCCA‑CCCAGGGCAGCATc                                                                              >  5:108766/1‑149 (MQ=255)                                                                          agGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGgt                                                                           <  1:194278/149‑1 (MQ=255)                                                                            gccACCCGCACCACCCCCACGCACCTGGGCAACACCCTTGCCACGCAGACGTAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGgtgt                                                                         <  6:108766/147‑1 (MQ=255)                                                                                 ccGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCt                                                                     >  8:25866/1‑148 (MQ=255)                                                                                       caccaccacGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGc                                                              >  3:18488/1‑149 (MQ=255)                                                                                             cacGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTca                                                        >  2:108966/1‑149 (MQ=255)                                                                                               cGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTcaca                                                      <  7:25866/149‑1 (MQ=255)                                                                                                gCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAg                                                     >  6:223723/1‑149 (MQ=255)                                                                                                   ccGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTAc                                                  <  7:306980/149‑1 (MQ=255)                                                                                                      ggaaggcacccagaccggcaagcagttccgtctgcgtggcaagggtgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACaaa                                               >  8:104359‑M2/48‑149 (MQ=255)                                                                                                       gaaggcacccagaccggcaagcagttccgtctgcgtggcaagggtgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAAt                                              >  1:303058‑M2/47‑149 (MQ=255)                                                                                                           gcacccagaccggcaagcagttccgtctgcgtggcaagggtgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCtt                                          <  2:303058‑M2/107‑1 (MQ=255)                                                                                                           gcacccagaccggaaagcagttccgtctgcgtggcaagggtgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGTCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCtt                                          <  7:104359‑M2/107‑1 (MQ=255)                                                                                                           acacCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCtt                                          >  5:289663/1‑149 (MQ=255)                                                                                                           acacCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCtt                                          <  5:223723/149‑1 (MQ=255)                                                                                                               CCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAgg                                                                                      >  7:144169‑M1/1‑101 (MQ=255)                                                                                                               CCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAgg                                                                                      <  8:144169‑M1/101‑1 (MQ=255)                                                                                                                CTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCAt                                     <  6:93391‑M1/149‑1 (MQ=255)                                                                                                                     cACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCgcgc                                <  6:289663/149‑1 (MQ=255)                                                                                                                           gACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAg                          <  1:79835/149‑1 (MQ=255)                                                                                                                              ggAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGAtt                       >  4:169259/1‑149 (MQ=255)                                                                                                                                 aCTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCg                    <  8:62377/149‑1 (MQ=255)                                                                                                                                   tGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGt                   >  4:97779/1‑148 (MQ=255)                                                                                                                                    gCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCa                                                             <  3:21078/105‑1 (MQ=255)                                                                                                                                    gCTTGACGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCa                                                             >  4:21078/1‑105 (MQ=255)                                                                                                                                     cTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGc                 <  3:178799/148‑1 (MQ=255)                                                                                                                                     cTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTCCGTg                  <  8:5110/147‑1 (MQ=255)                                                                                                                                         ccGGTCTGGGTGCCTTCCGTAAAATTCAGCTTAACGCGACCATCCAGGGTCGGCACTTTTAGCTCGCCACCCCTTAGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTcac             <  1:108966/149‑1 (MQ=255)                                                                                                                                            gTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTcacgcac         >  3:36938/1‑149 (MQ=255)                                                                                                                                                 ggtgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTCacgcacgc       <  3:97779‑M2/142‑1 (MQ=255)                                                                                                                                                   tgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTCACGCACGCTGATc  <  4:18488‑M2/147‑1 (MQ=255)                                                                                                                                                   tgCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTCACGCACGCTGATc  <  5:93391‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACGCAGCTCTTCGAGCAGCTCGCGCTGACGGCGACTGAGATTGACCGGGGTTTCTACGGCCACACGGCACAGCAGGTCACCCGCACCACCACCACGCACCGGGGCAACACCCTTGCCACGCAGACGGAACTGCTTGCCGGTCTGGGTGCCTTCCGGAATCTTCAGCTTCACGCGACCATCCAGGGTCGGCACTTCCAGCTCGCCA‑CCCAGGGCAGCATCGGTGTAGCTGATCGGCACTTCACAGTACAAATGCTTGCCATCGCGCTGGAAGATTTCGTGCTCACGCACGCTGATC  >  NC_002947/5374397‑5374691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.