New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5844930 =	54 (1.020)	3 (0.060)	3/240	NT	5.9%	coding (1552/1599 nt)	PP_5122	GMC family oxidoreductase
	?	NC_002947	5844965 =	45 (0.900)					coding (1587/1599 nt)	PP_5122	GMC family oxidoreductase

TGTGCGACAGCCTGGGCCGCCATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGTGTTGTACCCGGG  >  NC_002947/5844817‑5845112                                                                                                                                                     |                                                                                                                                                    tgtgCGACAGCCTGGGCCGCCATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGca                                                                                                                                                     <  4:81419/149‑1 (MQ=255)      gccAGCCTGGGCCGCCATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAg                                                                                                                                                >  5:250524/3‑149 (MQ=255)       aCAGCCTGGGCCGCCATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAgc                                                                                                                                               >  4:113376/1‑149 (MQ=255)          gCCTGGGCCGCCATCACCAGCTGTAAAACCTGGCGATTCACGACGGATCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCa                                                                                                                                            <  6:250524/149‑1 (MQ=255)               ggCCGCCATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGAc                                                                                                                                        <  3:57920/148‑1 (MQ=255)                    ccATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGaa                                                                                                                                  <  4:339337/149‑1 (MQ=255)                        cACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAgcgc                                                                                                                                             >  4:115719/1‑134 (MQ=255)                        cACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAgcgc                                                                                                                                             <  3:115719/134‑1 (MQ=255)                         aCCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATgg                                                                                                                             <  1:25950/149‑1 (MQ=255)                          ccAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGc                                                                                                                            >  3:218845/1‑149 (MQ=255)                              cTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCt                                                                                                                        <  3:113376/149‑1 (MQ=255)                                   aaaCCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCta                                                                                                                   <  4:218845/149‑1 (MQ=255)                                            gATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAAc                                                                                                                                     >  3:15864/1‑122 (MQ=255)                                            gATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAAc                                                                                                                                     <  4:15864/122‑1 (MQ=255)                                            gATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGcc                                                                                                            <  8:247538/147‑1 (MQ=255)                                            gATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCaa                                                                                                          >  7:247538/1‑148 (MQ=255)                                                       gTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGcc                                                                                                                           <  6:151543/121‑1 (MQ=255)                                                       gTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGcc                                                                                                                           >  5:151543/1‑121 (MQ=255)                                                        ttCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCa                                                                                              >  4:311871/1‑149 (MQ=255)                                                        ttCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCa                                                                                              >  1:55290/1‑149 (MQ=255)                                                            cTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCa                                                                                                        <  3:291922/135‑1 (MQ=255)                                                            cTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCa                                                                                                        >  4:291922/1‑135 (MQ=255)                                                                    caccaGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCgg                                                                                  >  3:77392/1‑149 (MQ=255)                                                                     accaGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCggg                                                                                 <  3:311871/149‑1 (MQ=255)                                                                     accaGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCggg                                                                                 <  8:186266/149‑1 (MQ=255)                                                                           aTCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCg                                                                           >  6:296452/1‑149 (MQ=255)                                                                             ccgcgcAAACACGCAATTGTAGTTGTATCCCATCAGCGCCAGGCTCATAGAACCACTGGTCAGCCGCCTGGAACACAGCGCATGACAACGAACATGTACAATGTCTATAGTGCCATCAGTCGGATGAAAGACTTGGACGGGTCGCCGTc                                                                         >  6:162522/3‑149 (MQ=255)                                                                               gcgcCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGa                                                                                                                                         >  7:245816/1‑83 (MQ=255)                                                                               gcgcCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGa                                                                                                                                         <  8:245816/83‑1 (MQ=255)                                                                                        cGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAAc                                                                                                                                 >  8:265605/1‑82 (MQ=255)                                                                                               gTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGa                                                        <  2:55290/148‑1 (MQ=255)                                                                                                tCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCGGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACt                                                      >  1:247475/1‑149 (MQ=255)                                                                                                tCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACt                                                      >  7:319599/1‑149 (MQ=255)                                                                                                tCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACt                                                      >  3:165672/1‑149 (MQ=255)                                                                                                  ggTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTcc                                                    >  7:318712/1‑149 (MQ=255)                                                                                                      tATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTAc                                                               >  8:250290/1‑134 (MQ=255)                                                                                                      tATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTAc                                                               <  7:250290/134‑1 (MQ=255)                                                                                                      tATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCaa                                                >  6:94561/1‑149 (MQ=255)                                                                                                           cATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCAc                                           >  6:333844/1‑149 (MQ=255)                                                                                                                gcgcCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTccag                                      >  4:266629/1‑149 (MQ=255)                                                                                                                   ccaggcggctgaccagtgcttcgctgagcctggcACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATc                                                           >  6:348745‑M2/35‑125 (MQ=255)                                                                                                                    CAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTccagccag                                  >  4:165672‑M1/1‑149 (MQ=255)                                                                                                                      ggcggctgaccagtgcttcgctgagcctggcACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTgcgc                                                                  >  8:78014‑M2/32‑115 (MQ=255)                                                                                                                      ggcggctgaccagtgcttcgctgagcctggcACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTgcgc                                                                  <  7:78014‑M2/84‑1 (MQ=255)                                                                                                                       GCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTccc                                                   >  2:13151‑M1/1‑129 (MQ=255)                                                                                                                       GCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTccc                                                   <  1:13151‑M1/129‑1 (MQ=255)                                                                                                                           aGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATcc                                                          >  3:315112/1‑118 (MQ=255)                                                                                                                           aGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATcc                                                          <  4:315112/118‑1 (MQ=255)                                                                                                                             cGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGAcgcg                         <  3:266629/149‑1 (MQ=255)                                                                                                                                   aCTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGc                                                                                               <  2:282773/73‑1 (MQ=255)                                                                                                                                        tCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGa                                                        <  7:144223/107‑1 (MQ=255)                                                                                                                                        tCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGa                                                        >  8:144223/1‑107 (MQ=255)                                                                                                                                           gccgccTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGtgtt           <  5:333844/149‑1 (MQ=255)                                                                                                                                            ccgccTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAg               <  7:69793/144‑1 (MQ=255)                                                                                                                                            ccgccTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAg               >  8:69793/1‑144 (MQ=255)                                                                                                                                            ccgccTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGtgttg          >  6:333168/1‑149 (MQ=255)                                                                                                                                             cgccTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCAGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGtgttg          >  2:165280/1‑148 (MQ=255)                                                                                                                                                 tggcACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGTGTTGTAccc     >  5:297734‑M2/5‑149 (MQ=255)                                                                                                                                                   gcACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCa                                            >  4:291014‑M2/3‑108 (MQ=255)                                                                                                                                                    cACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCTGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGTGTTGTACCCggg  <  5:162522‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGTGCGACAGCCTGGGCCGCCATCACCAGCTGGAAAACCTGTCGATTCACGACGGTTCACTGTTCCCCACCAGCATCGGCGCCAACCCGCAATTGTCGGTGTATGCCATCAGCGCCAGGCTCAGCGAAGCACTGGTCAGCCGCCTGGCACACAGCGCATGACAACGAACATGGCCCCTGTCTATAGTGCCATCAGTCGGCCGCATGACTTGGCCGGGGCGCCGTCGCTGCGCTACCATCCGACTCCCCAACGCACTCCAGCCAGGATGACGCGATGAACCGAGTGTTGTACCCGGG  >  NC_002947/5844817‑5845112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.