mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,327,121 | 0 | C | T | 66.2% | 25.9 / 70.8 | 80 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 699,722 | 0 | A | G | 56.9% | 9.3 / 57.9 | 51 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,348,705 | 0 | A | G | 56.5% | 0.8 / 53.9 | 46 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 196,879 | 0 | G | A | 50.0% | ‑3.7 / 10.5 | 13 | V795V (GTG→GTA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 195,634 | 0 | C | T | 30.6% | 85.5 / 44.5 | 64 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,988,829 | 0 | A | G | 27.3% | 40.3 / 10.8 | 24 | intergenic (+123/‑423) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,850 | 0 | C | T | 27.3% | 41.9 / 11.2 | 23 | intergenic (+144/‑402) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,819 | 0 | T | C | 26.1% | 43.4 / 11.8 | 24 | intergenic (+113/‑433) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,825 | 0 | G | T | 26.1% | 46.8 / 12.7 | 23 | intergenic (+119/‑427) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,826 | 0 | C | T | 26.1% | 43.6 / 10.4 | 23 | intergenic (+120/‑426) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,835 | 0 | G | C | 26.1% | 53.1 / 13.4 | 24 | intergenic (+129/‑417) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,837 | 0 | C | G | 26.1% | 51.5 / 11.0 | 23 | intergenic (+131/‑415) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,848 | 0 | C | T | 26.1% | 45.7 / 10.7 | 23 | intergenic (+142/‑404) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 5,988,844 | 0 | C | G | 25.0% | 55.6 / 12.6 | 24 | intergenic (+138/‑408) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | NC_002947 | 195,559 | 0 | C | A | 21.1% | 120.3 / 21.6 | 57 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Marginal new junction evidence (lowest skew 10 of 166 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4808174 = | 1 (0.030) | 5 (0.190) | 4/220 | 3.5 | 30.5% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | NC_002947 | = 5988935 | 22 (0.830) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947 | = 3971387 | NA (NA) | 6 (0.180) | 6/282 | 3.6 | NA | coding (1306/1536 nt) | PP_3501 | transposase |
| ? | NC_002947 | = 3971438 | NA (NA) | coding (1357/1536 nt) | PP_3501 | transposase | |||||
| * | ? | NC_002947 | 4683165 = | 48 (1.380) | 4 (0.140) | 4/246 | 3.9 | 8.5% | intergenic (+24/‑197) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4683257 = | 46 (1.560) | intergenic (+116/‑105) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | = 1426981 | NA (NA) | 6 (0.180) | 5/278 | 3.9 | NA | coding (879/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | = 1427010 | NA (NA) | coding (908/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
| * | ? | NC_002947 | = 5669426 | 43 (1.230) | 4 (0.130) | 4/262 | 4.2 | 9.7% | intergenic (+27/‑98) | ahcY/metF | adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase |
| ? | NC_002947 | = 5669447 | 36 (1.140) | intergenic (+48/‑77) | ahcY/metF | adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase | |||||
| * | ? | NC_002947 | 6117172 = | 55 (1.580) | 4 (0.120) | 4/272 | 4.3 | 7.3% | coding (1381/1401 nt) | lpd | dihydrolipoyl dehydrogenase |
| ? | NC_002947 | 6117223 = | 50 (1.530) | intergenic (+31/+81) | lpd/PP_5367 | dihydrolipoyl dehydrogenase/transketolase domain‑containing protein | |||||
| * | ? | NC_002947 | 5126003 = | 37 (1.060) | 4 (0.120) | 4/274 | 4.3 | 10.5% | coding (796/891 nt) | PP_4512 | DMT superfamily permease |
| ? | NC_002947 | 5126071 = | 33 (1.000) | coding (864/891 nt) | PP_4512 | DMT superfamily permease | |||||
| * | ? | NC_002947 | 2268208 = | 30 (0.860) | 5 (0.150) | 4/274 | 4.3 | 15.1% | coding (533/1506 nt) | purF | amidophosphoribosyl transferase |
| ? | NC_002947 | 2268272 = | 28 (0.850) | coding (597/1506 nt) | purF | amidophosphoribosyl transferase | |||||
| * | ? | NC_002947 | = 1541583 | 43 (1.230) | 4 (0.120) | 4/272 | 4.3 | 9.0% | intergenic (‑59/‑42) | panE/PP_1352 | 2‑dehydropantoate 2‑reductase/hypothetical protein |
| ? | NC_002947 | = 1541595 | 41 (1.250) | intergenic (‑71/‑30) | panE/PP_1352 | 2‑dehydropantoate 2‑reductase/hypothetical protein | |||||
| * | ? | NC_002947 | 336206 = | 19 (0.540) | 4 (0.140) | 3/236 | 4.3 | 23.2% | intergenic (+54/+339) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 336326 = | 11 (0.390) | intergenic (+174/+219) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||