| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 561381 = | 65 (1.100) | 6 (0.110) | 6/240 | NT | 9.7% | intergenic (+18/‑49) | rpmJ/PP_mr09 | 50S ribosomal protein L36/Alpha_RBS regulatory region |
| ? | NC_002947 | 561409 = | 52 (0.960) | intergenic (+46/‑21) | rpmJ/PP_mr09 | 50S ribosomal protein L36/Alpha_RBS regulatory region | |||||
TTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACTAGCTGCTGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/561529‑561381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctgggttGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAACAAGCATACTGTTATCT > NC_002947/561409‑561546 TTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTTGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACTAGCTGCTGGGT < 7:44862/148‑1TTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACTAGCTGCTGGGTT > 2:344674/1‑149 CTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCTGCTAGTGTGCTGCTGGGTTGATTATTCGTTT < 8:128339/142‑1 CTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCTAGTGTGCTGCTGGGTTGATTATTCGTTT > 7:128339/1‑142 CAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCTAGTGTGCTGCTGGGTTGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTG < 2:18798/147‑1 AACCCAGCAGCACACTAGCTGCTGGGTTGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAA > 4:55775/1‑149 CCAGCAGCACACTAGCTGCTGGGTTGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAACAA < 1:18798/149‑1 CCAGCAGCACACTAGCTGCTGGGTTGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAAC > 2:108715/1‑147 GCTGCTGGGTTGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAACAAGCATACTGTTATCT > 2:232530/1‑149 TTATCTGGAATGTTGACGCCTGCAATACGGGCCATTCAGTGGGACTCCAATTGACAGCTACCTACGCCCCGGAAGCCAAGAAATAGGGCGCGAGATAATATCGCTGTAGAAACGAATAATCAACCCAGCAGCACACTAGCTGCTGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/561529‑561381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgctgggttGATTATTCGTTTCTACAGCGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAACAAGCATACTGTTATCT > NC_002947/561409‑561546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |