New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	561381 =	65 (1.100)	6 (0.110)	6/240	NT	9.7%	intergenic (+18/‑49)	rpmJ/PP_mr09	50S ribosomal protein L36/Alpha_RBS regulatory region
	?	NC_002947	561409 =	52 (0.960)					intergenic (+46/‑21)	rpmJ/PP_mr09	50S ribosomal protein L36/Alpha_RBS regulatory region

GAGGAGTCGGTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAA  >  NC_002947/561235‑561529                                                                                                                                                   |                                                                                                                                                        gaggagTCGGTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCaaa                                                                                                                                                        <  6:311741/148‑1 (MQ=255)       tCGGTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCcagca                                                                                                                                                 <  1:345286/149‑1 (MQ=255)         ggTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCcagca                                                                                                                                                 >  2:345286/1‑147 (MQ=255)         ggTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCagcagc                                                                                                                                               >  3:278130/1‑149 (MQ=255)         agataacagtatgcttgttatctggaatgttgacgcctgcaatacgggccattcagtgggactccaattgacagctacctacgccccggaagccaagaaatagggcgcgagataatatcgctgtagaaacgaataatcAACCCagcagc                                                                                                                                               >  2:232530‑M1/139‑149 (MQ=255)          gTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCagcagc                                                                                                                                               >  1:253420/1‑148 (MQ=255)             aTGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAgt                                                                                                                                           >  3:350999/1‑149 (MQ=255)             aTGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAgt                                                                                                                                           >  4:314088/1‑149 (MQ=255)             aTGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAgt                                                                                                                                           <  3:82014/149‑1 (MQ=255)              tGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCaaa                                                                                                                                                        <  2:198278/135‑1 (MQ=255)              tGAAAGTTCGTGCATCGGTGAAAAAGCAGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCaaa                                                                                                                                                        >  1:198278/1‑135 (MQ=255)               gAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAgtgt                                                                                                                                         >  5:341703/1‑149 (MQ=255)                       ttgttatctggaatgttgacgcctgcaatacgggccattcagtgggactccaattgacagctacctacgccccggaagccaagaaatagggcgcgagataatatcgctgtagaaacgaataatcAACCCAGCAGCTAGTGTGC‑‑TGCTgg                                                                                                                               <  1:18798‑M1/25‑1 (MQ=255)                       gTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTgg                                                                                                                               <  6:276823/149‑1 (MQ=255)                        tGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAATCAGCGCCAAGGGTGAGTGTGATCTGCGCTTCAATCCCAGGATCTAGTGTGC‑‑TGCTggg                                                                                                                              <  1:159068/149‑1 (MQ=255)                         gttatctggaatgttgacgcctgcaatacgggccattcagtgggactccaattgacagctacctacgccccggaagccaagaaatagggcgcgagataatatcgctgtagaaacgaataatcAACCCAGCAGCTAGTGTGC‑‑TGCTgg                                                                                                                               >  2:108715‑M1/123‑147 (MQ=255)                          ttatctggaatgttgacgcctgcaatacgggccattcagtgggactccaattgacagctacctacgccccggaagccaagaaatagggcgcgagataatatcgctgtagaaacgaataatcAACCCAGCAGCTAGTGTGC‑‑TGCTGGGtt                                                                                                                            >  4:55775‑M1/122‑149 (MQ=255)                          cATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGtt                                                                                                                            <  6:341703/149‑1 (MQ=255)                              ggTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGat                                                                                                                         <  7:8469/148‑1 (MQ=255)                               gTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGa                                                                                                                          >  2:245108/1‑146 (MQ=255)                               gTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGa                                                                                                                          <  1:245108/146‑1 (MQ=255)                                          gtgCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTa                                                                                                             >  3:311631/1‑148 (MQ=255)                                           gcgggTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACa                                                                                                           <  6:151256/145‑1 (MQ=255)                                               gTACCTCCAAGATCATCCGGCGCGCAGCCGTCGTACGAGTCTTCTGCAGCGCGGAACCGCGTCACAAACAGCGCAACGGCTGAGTGTGATCTGCTCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑Ga                                                                                                      <  4:278044/149‑1 (MQ=255)                                                   cTGCAAGATCATCCGTCGCGAAGGTGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑Gatat                                                                                                   >  1:202540/1‑148 (MQ=255)                                                    tGCAAGATCATCCGTCGCGAAGGCGACGTACGAGTGATCTGCAGCCCGGAACCGCGTCACAAACAGCGCCAAGGCTCAGTGTGATCTGCGCTTCAAACCCAGCAGCTACTGTGC‑‑TGCTGGGTTGATTATTCGTTTATACAGC‑Gataata                                                                                                 >  8:303995/1‑149 (MQ=255)                                                      ctaGATCATCCGTCGCGAAGTCGTCGTTCGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCATTGCTGAGTGTTATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTAtc                                                                                               <  7:303995/147‑1 (MQ=255)                                                      ccagctcatcCGTCGCGCAGGCGTCGCTCGCGTCCGCTGCAGCCCGGACCCGCGTCACAACCAGCGCCACCGCTGAGTGTGACCTCCGCTTCAAACCCAGCAGCTCGTCTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTAtc                                                                                               <  4:278130/144‑1 (MQ=255)                                                      cAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTAtc                                                                                               >  7:293298/1‑149 (MQ=255)                                                        aGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTAtctc                                                                                             <  8:309993/149‑1 (MQ=255)                                                           tcatcCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTcgcg                                                                                          >  4:342364/1‑149 (MQ=255)                                                             atcCTTCGCGAAGGCGTCGTACGAGTGATCTGCAGGGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGcc                                                                                        <  3:96747/149‑1 (MQ=255)                                                             atcCGTCGCGAAGGTGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGcc                                                                                        <  2:202540/149‑1 (MQ=255)                                                             atcCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGcc                                                                                        <  4:311631/149‑1 (MQ=255)                                                              tcCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTAACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGccc                                                                                       >  1:83055/1‑149 (MQ=255)                                                                 gTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTAt                                                                                    >  4:231730/1‑149 (MQ=255)                                                                     cgAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCt                                                                                >  4:8919/1‑149 (MQ=255)                                                                            gtcgtACGAGTGATCTGCAGCGCGGAACCTCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGtt                                                                                                                 <  4:146224/110‑1 (MQ=255)                                                                            gtcgtACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGtt                                                                                                                 >  3:146224/1‑110 (MQ=255)                                                                               gtACGAGTGATCTGCAGCGCGGAACCGCTTCACAAACAGCGCCAAGGCTGAGTTTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCgg                                                                      <  8:108550/149‑1 (MQ=255)                                                                                tACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCggg                                                                     <  3:8919/149‑1 (MQ=255)                                                                                  cGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCgggg                                                                    <  3:231730/148‑1 (MQ=255)                                                                                  cGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGc                                                                   <  3:342364/149‑1 (MQ=255)                                                                                      tGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCgtag                                                               >  3:131831/1‑149 (MQ=255)                                                                                        aTCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCgtagg                                                              >  2:103797/1‑148 (MQ=255)                                                                                            gCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCt                                                         >  6:146048/1‑149 (MQ=255)                                                                                             cAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCgtaggt                                                             <  6:48824/144‑1 (MQ=255)                                                                                             cAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCt                                                         <  3:111935/148‑1 (MQ=255)                                                                                             cAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCt                                                         <  4:350999/148‑1 (MQ=255)                                                                                               gcgcGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGt                                                       >  7:30987/1‑148 (MQ=255)                                                                                                     aaCCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGCAAGGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAAtt                                                  >  1:110195/1‑149 (MQ=255)                                                                                                     aaCCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTgg                                                <  2:253420/149‑1 (MQ=255)                                                                                                      caagaaatagggcgcgagataatatcgctgtagaaacgaataatcAACCCAGCAGCACACTAGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTg                                                 <  2:18798‑M1/102‑1 (MQ=255)                                                                                                      aCCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTg                                                                              <  8:188700/118‑1 (MQ=255)                                                                                                      aCCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTg                                                                              >  7:188700/1‑118 (MQ=255)                                                                                                      aCCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGa                                               <  2:83055/149‑1 (MQ=255)                                                                                                              acaAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACt                                       >  7:164525/1‑149 (MQ=255)                                                                                                              acaAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACt                                       >  7:128048/1‑149 (MQ=255)                                                                                                               caAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACt                                       >  1:344674/1‑148 (MQ=255)                                                                                                               caAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCGGTCAATTGGAGTCCCACt                                       >  5:243744/1‑148 (MQ=255)                                                                                                                  aCAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GAtatt                                                                                                  >  3:112437/1‑86 (MQ=255)                                                                                                                  aCAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GAtatt                                                                                                  <  4:112437/86‑1 (MQ=255)                                                                                                                  aCAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATGTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGact                                   >  2:258648/1‑147 (MQ=255)                                                                                                                      cgcCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGcc                               <  3:314088/149‑1 (MQ=255)                                                                                                                       gcCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGa                                               <  6:50941/132‑1 (MQ=255)                                                                                                                       gcCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGa                                               >  5:50941/1‑132 (MQ=255)                                                                                                                        ccAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCg                             >  1:150757/1‑149 (MQ=255)                                                                                                                              cTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGc                       <  8:30987/149‑1 (MQ=255)                                                                                                                                      gATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTc                >  2:10301/1‑148 (MQ=255)                                                                                                                                       aaacgaataatcAACCCAGCAGCACACTAGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAg                     >  7:128339‑M1/13‑142 (MQ=255)                                                                                                                                       aaacgaataatcAACCCAGCAGCACACTAGC‑‑AGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAg                     <  8:128339‑M1/130‑1 (MQ=255)                                                                                                                                           gcgcTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGc                                                                            <  1:127312/83‑1 (MQ=255)                                                                                                                                           gcgcTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGc                                                                            >  2:127312/1‑83 (MQ=255)                                                                                                                                            cgcTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAAc             <  1:103797/145‑1 (MQ=255)                                                                                                                                            cgcTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTc         >  4:235135/1‑149 (MQ=255)                                                                                                                                              cTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGCGGATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTc         >  1:96616/1‑148 (MQ=255)                                                                                                                                                   AACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATaa  >  2:344674‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                        GAGGAGTCGGTAATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATCATCCGTCGCGAAGGCGTCGTACGAGTGATCTGCAGCGCGGAACCGCGTCACAAACAGCGCCAAGGCTGAGTGTGATCTGCGCTTCAAACCCAGCAGCTAGTGTGC‑‑TGCTGGGTTGATTATTCGTTTCTACAGC‑GATATTATCTCGCGCCCTATTTCTTGGCTTCCGGGGCGTAGGTAGCTGTCAATTGGAGTCCCACTGAATGGCCCGTATTGCAGGCGTCAACATTCCAGATAA  >  NC_002947/561235‑561529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.