| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1880369 = | 53 (0.900) | 5 (0.090) | 5/248 | NT | 9.2% | coding (43/930 nt) | PP_1688 | LysR family transcriptional regulator |
| ? | NC_002947 | 1880411 = | 49 (0.880) | coding (85/930 nt) | PP_1688 | LysR family transcriptional regulator | |||||
TGGGCGCCAGATGGCGTCAGGGCCATGCTGCGTGTGGTTCGGCTGAGCAGGCGTACTTGCAGGTGGCCTTCCAGCCGCGCCAGGTTCTGGCTGACGGCTGCCGGACTGAGGCCGAGAATACGGGCACCAGCAGCGATGCTACCGGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1880517‑1880369‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCCCAGTATTACGAGCGTGTAAAGCATATCGAGCGTGATCTGGCC > NC_002947/1880411‑1880557 TGGGCGCCAGATGGCGTCAGGGCCATGCTGCGTGTGGTTCGGCTGAGCAGGCGTACTTGCAGGTGGCCTTCCAGCCGCGCCAGGTTCTGGCTGACGGCTGCCGGACTGAGGCCGAGAATACGGGCACCAGCAGCGATGCTACCGGCCTC > 2:170875/1‑149 GACTGAGGCCGAGAATACGGGCACCAGCTGCGATGCTACCGGCCTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCACTGACGCCATCTGGCG > 1:209201/1‑149 CTGAGGCCGAGAATACGGGCACCAGCAGCGATGCTACCGGCCTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCT < 7:313864/106‑1 CTGAGGCCGAGAATACGGGCACCAGCAGCGATGCTACCGGCCTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCT > 8:313864/1‑106 TGAGGCCGAGAATACGGGCACCAGCAGCGATGCTACCGGCCTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCC > 1:338523/1‑148 CGGGCACCAGCAGCGATGCTACCGGCCTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCCCAGTATTACGAGCGT < 2:338523/149‑1 CTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCCCAGTATTACGAGCGTGTAAAGCATATCGAGC > 3:143244/1‑139 CTCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCCCAGTATTACGAGCGTGTAAAGCATATCGAGC < 4:143244/139‑1 TCAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCCCAGTATTACGAGCGTGTAAAGCATATCGAGCGTGATCTGGCC > 4:209458/1‑149 CAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGTGCCCAGTATTACGAGCGTGTAAAGC > 5:123847/1‑128 CAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGTGCCCAGTATTACGAGCGTGTAAAGC < 6:123847/128‑1 TGGGCGCCAGATGGCGTCAGGGCCATGCTGCGTGTGGTTCGGCTGAGCAGGCGTACTTGCAGGTGGCCTTCCAGCCGCGCCAGGTTCTGGCTGACGGCTGCCGGACTGAGGCCGAGAATACGGGCACCAGCAGCGATGCTACCGGCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1880517‑1880369‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcAGTCCGGCAGCCGTCAGCCAGAACCTGGCGCGGCTGGAAGGCCACCTGCAAGTACGCCTGCTCAGCCGAACCACACGCAGCATGGCCCTGACGCCATCTGGCGCCCAGTATTACGAGCGTGTAAAGCATATCGAGCGTGATCTGGCC > NC_002947/1880411‑1880557 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |