New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 190387635 (0.590)3 (0.050) 3/246 NT 8.1% coding (131/2553 nt) nirB nitrite reductase large subunit
?NC_002947 = 1903914 35 (0.630)coding (169/2553 nt) nirB nitrite reductase large subunit

TGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1903729‑1903876
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattcggACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGCCGACGATGACCAGTCGCTCTCGTTGCCC  <  NC_002947/1903914‑1903767
                                                                                                                                                                                                                                                                                                        
TGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACCGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGG                                                                                                                                                      <  7:286599/148‑1
                                              AGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACC                                                                                                       <  2:308246/149‑1
                                                                   CAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCC                                                                                                      <  3:33208/129‑1
                                                                   CAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCC                                                                                                      >  4:33208/1‑129
                                                                                                                                               TTCGGACAGGTGCACGCTGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGGGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGCCGACGATGACCAGTCGCTCTCGTT      <  4:122093/149‑1
                                                                                                                                               TTCGGACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGCCGACGATGACCAGTCGCTCTCGTT      >  4:228410/1‑149
                                                                                                                                               TTCGGACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGC                              <  7:43873/125‑1
                                                                                                                                               TTCGGACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGC                              >  8:43873/1‑125
                                                                                                                                                   GACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGCCGACGATGACCAGTCGCTCTCGTTGCCC  <  2:330979/149‑1
                                                                                                                                                   GACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGCCGACGATGACCAGTCGCTCTCGTTGCCC  >  5:49495/1‑149
                                                                                                                                                                                                                                                                                                        
TGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1903729‑1903876
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtattcggACAGGTGCACGCGGTCATACGCGCGTTGGCGCTCTTCGCCGAATACCCGCACCTCGAAGCGCTGCAGGGCGCCGCGACTGACCAGTTGTTCGACGCAATGGTGGCCGACCATGCCGTTGCCGACGATGACCAGTCGCTCTCGTTGCCC  <  NC_002947/1903914‑1903767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.