New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1903876	35 (0.590)	3 (0.050)	3/246	NT	8.1%	coding (131/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	= 1903914	35 (0.630)					coding (169/2553 nt)	nirB	nitrite reductase large subunit

TGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGA  >  NC_002947/1903729‑1904023                                                                                                                                                    |                                                                                                                                                     tGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACCGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGG                                                                                                                                                      <  7:286599‑M1/148‑1 (MQ=255)       aGGATCGGCTTATGAAGGCAACAGCGAGCAGCGCGCAACGAGAGCGACTGGACATCGTCGGCAACGGCATGGTCGGCCACCATTCCGTCGAACAAATGGTCAGTCGCGGCCCCCTGCAGCGCTTCGACGTGCCGGTATTCGGCCAagag                                                                                                                                               >  8:99488/1‑149 (MQ=255)              gCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGACCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAAc                                                                                                                                        <  4:30407/149‑1 (MQ=255)                   tGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAAcgc‑gcg                                                                                                                                  >  3:228410/1‑149 (MQ=255)                     aaGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTa                                                                                                                                >  7:112343/1‑149 (MQ=255)                             aGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACcgcg                                                                                                                        <  4:108902/149‑1 (MQ=255)                                  gcagcGGGCAACGAGAGCGACTGGGCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCAc                                                                                                                   <  7:99488/149‑1 (MQ=255)                                       gggCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTc                                                                                                              <  2:330979‑M2/149‑2 (MQ=255)                                       gggCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTc                                                                                                              >  5:49495‑M2/1‑148 (MQ=255)                                           aaCGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaa                                                                                                          >  4:228410‑M2/1‑144 (MQ=255)                                           aaCGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCCCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACAGCGTGCACCTGTccgaa                                                                                                          <  4:122093‑M2/149‑6 (MQ=255)                                               agagCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaatacc                                                                                                       <  2:308246‑M1/149‑48 (MQ=255)                                                      cTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTcggca                                                                                                >  5:141485/1‑147 (MQ=255)                                                         gTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAg                                                                                            >  7:244483/1‑149 (MQ=255)                                                               gtcgGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCtgtg                                                                                       <  6:219707/148‑1 (MQ=255)                                                               gtcgGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGc                                                                                      >  8:95378/1‑149 (MQ=255)                                                                  ggCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCg                                                                                    >  5:204969/1‑148 (MQ=255)                                                                   gCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaa                                                                                                          <  7:43873‑M2/125‑6 (MQ=255)                                                                   gCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaa                                                                                                          >  8:43873‑M2/1‑120 (MQ=255)                                                                   gCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGa                                                                                   >  7:298590/1‑148 (MQ=255)                                                                    cAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaataccc                                                                                                      <  3:33208‑M1/129‑49 (MQ=255)                                                                    cAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaataccc                                                                                                      >  4:33208‑M1/1‑81 (MQ=255)                                                                         gCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTg                                                                            <  8:298590/149‑1 (MQ=255)                                                                             ggTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCt                                                                                                                 >  4:98871/1‑108 (MQ=255)                                                                             ggTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCt                                                                                                                 <  3:98871/108‑1 (MQ=255)                                                                                  gCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCtgtgt                                                                   <  6:204969/149‑1 (MQ=255)                                                                                     accaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCtgtgt                                                                   >  7:65880/1‑146 (MQ=255)                                                                                     accaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCtgtgt                                                                   <  8:65880/146‑1 (MQ=255)                                                                                     accaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAg                                                                <  7:95378/149‑1 (MQ=255)                                                                                      ccaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAg                                                                >  6:352106/1‑148 (MQ=255)                                                                                       caTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCa                                                              >  3:14838/1‑149 (MQ=255)                                                                                                    aacTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAg                                                 <  4:14838/149‑1 (MQ=255)                                                                                                      cTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGc                                               >  6:136331/1‑149 (MQ=255)                                                                                                         gTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAg                                                                <  4:33188/129‑1 (MQ=255)                                                                                                              tCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCg                                       >  7:65972/1‑149 (MQ=255)                                                                                                                gcggcgCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCGGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGtg                                     <  5:136331/149‑1 (MQ=255)                                                                                                                 cggcgCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGCGGCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGtg                                     >  1:96662/1‑149 (MQ=255)                                                                                                                     gcCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGtgcacct                                >  2:56259/1‑149 (MQ=255)                                                                                                                             gcgcTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCACCGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTgg                        <  5:352106/149‑1 (MQ=255)                                                                                                                               gcTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGt                      <  1:330979/149‑1 (MQ=255)                                                                                                                               gcTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGt                      <  2:95159/149‑1 (MQ=255)                                                                                                                                 ttCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGAACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGt                      >  5:75231/1‑147 (MQ=255)                                                                                                                                   cGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGa                    <  8:244483/147‑1 (MQ=255)                                                                                                                                           gggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttg                              <  3:33208‑M2/129‑82 (MQ=255)                                                                                                                                           gggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttg                              >  4:33208‑M2/1‑48 (MQ=255)                                                                                                                                           gggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTg          <  3:122093/149‑1 (MQ=255)                                                                                                                                            ggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgccgacgatgaccagtcgctct         <  2:308246‑M2/149‑103 (MQ=255)                                                                                                                                            ggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTgg         <  6:75231/149‑1 (MQ=255)                                                                                                                                                ttCGGacaggtgcacgctgtcatacgcgcgttggcgctcttcgccgaatacccgcacctcgaagggctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgccgacgatgaccagtcgctctcgtt      <  4:122093‑M1/149‑145 (MQ=255)                                                                                                                                                ttCGGacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgccgacgatgaccagtcgctctcgtt      >  4:228410‑M1/1‑5 (MQ=255)                                                                                                                                                ttCGGacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgc                              <  7:43873‑M1/125‑121 (MQ=255)                                                                                                                                                ttCGGacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgc                              >  8:43873‑M1/1‑5 (MQ=255)                                                                                                                                                ttCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGc                                        <  2:47497/114‑1 (MQ=255)                                                                                                                                                ttCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGc                                        >  1:47497/1‑114 (MQ=255)                                                                                                                                                    gacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgccgacgatgaccagtcgctctcgttgccc  <  2:330979‑M1/149‑149 (MQ=255)                                                                                                                                                    gacaggtgcacgcggtcatacgcgcgttggcgctcttcgccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgccgacgatgaccagtcgctctcgttgccc  >  5:49495‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGATCGAGGATCGGCTTATGAAGGCAACAGCGAGCAGCGGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGA  >  NC_002947/1903729‑1904023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.