New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1903876	35 (0.590)	3 (0.050)	3/246	NT	8.1%	coding (131/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	= 1903914	35 (0.630)					coding (169/2553 nt)	nirB	nitrite reductase large subunit

GGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACCGCGAGCGCCGCGAAGTCGTCACTGCCGCAGGTCGCTA  >  NC_002947/1903767‑1904062                                                                                                                                                     |                                                                                                                                                     gggCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTc                                                                                                                                                     >  5:49495‑M2/1‑148 (MQ=255) gggCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTc                                                                                                                                                     <  2:330979‑M2/149‑2 (MQ=255)     aaCGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaa                                                                                                                                                 >  4:228410‑M2/1‑144 (MQ=255)     aaCGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCCCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACAGCGTGCACCTGTccgaa                                                                                                                                                 <  4:122093‑M2/149‑6 (MQ=255)                cTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTcggca                                                                                                                                       >  5:141485/1‑147 (MQ=255)                   gTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAg                                                                                                                                   >  7:244483/1‑149 (MQ=255)                         gtcgGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCtgtg                                                                                                                              <  6:219707/148‑1 (MQ=255)                         gtcgGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGc                                                                                                                             >  8:95378/1‑149 (MQ=255)                            ggCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCg                                                                                                                           >  5:204969/1‑148 (MQ=255)                             gCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaa                                                                                                                                                 <  7:43873‑M2/125‑6 (MQ=255)                             gCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaa                                                                                                                                                 >  8:43873‑M2/1‑120 (MQ=255)                             gCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGa                                                                                                                          >  7:298590/1‑148 (MQ=255)                                   gCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTg                                                                                                                   <  8:298590/149‑1 (MQ=255)                                            gCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCtgtgt                                                                                                          <  6:204969/149‑1 (MQ=255)                                               accaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCtgtgt                                                                                                          >  7:65880/1‑146 (MQ=255)                                               accaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCtgtgt                                                                                                          <  8:65880/146‑1 (MQ=255)                                               accaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAg                                                                                                       <  7:95378/149‑1 (MQ=255)                                                ccaTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAg                                                                                                       >  6:352106/1‑148 (MQ=255)                                                 caTTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCa                                                                                                     >  3:14838/1‑149 (MQ=255)                                                              aacTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAg                                                                                        <  4:14838/149‑1 (MQ=255)                                                                cTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGc                                                                                      >  6:136331/1‑149 (MQ=255)                                                                   gTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAg                                                                                                       <  4:33188/129‑1 (MQ=255)                                                                        tCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCg                                                                              >  7:65972/1‑149 (MQ=255)                                                                          gcggcgCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCGGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGtg                                                                            <  5:136331/149‑1 (MQ=255)                                                                           cggcgCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGCGGCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGtg                                                                            >  1:96662/1‑149 (MQ=255)                                                                               gcCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGtgcacct                                                                       >  2:56259/1‑149 (MQ=255)                                                                                       gcgcTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCACCGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTgg                                                               <  5:352106/149‑1 (MQ=255)                                                                                         gcTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGt                                                             <  1:330979/149‑1 (MQ=255)                                                                                         gcTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGt                                                             <  2:95159/149‑1 (MQ=255)                                                                                           ttCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGAACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGt                                                             >  5:75231/1‑147 (MQ=255)                                                                                             cGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGa                                                           <  8:244483/147‑1 (MQ=255)                                                                                                     gggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttg                                                                     >  4:33208‑M2/1‑48 (MQ=255)                                                                                                     gggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttg                                                                     <  3:33208‑M2/129‑82 (MQ=255)                                                                                                     gggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTg                                                 <  3:122093/149‑1 (MQ=255)                                                                                                      ggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTccgaatacccgcacctcgaagcgctgcagggcgccgcgactgaccagttgttcgacgcaatggtggccgaccatgccgttgccgacgatgaccagtcgctct                                                <  2:308246‑M2/149‑103 (MQ=255)                                                                                                      ggTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTgg                                                <  6:75231/149‑1 (MQ=255)                                                                                                          ttCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGc                                                                               >  1:47497/1‑114 (MQ=255)                                                                                                          ttCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGc                                                                               <  2:47497/114‑1 (MQ=255)                                                                                                                gAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACcg                                      >  4:172913/1‑149 (MQ=255)                                                                                                                                   tATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACCGCGAGCGCCGCGAAgtcgt                    <  1:56259/149‑1 (MQ=255)                                                                                                                                     tGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACCGCGAGCGCCGCGAAgtcgtc                   <  8:65972/148‑1 (MQ=255)                                                                                                                                                aCCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGcc                                                       >  7:64066/1‑101 (MQ=255)                                                                                                                                                aCCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGcc                                                       <  8:64066/101‑1 (MQ=255)                                                                                                                                                aCCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACCGCGAGCGCCGCGAAGTCGTCACTGCCGCAGGt       >  6:274415/1‑149 (MQ=255)                                                                                                                                                     tCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACCGCGAGCGCCGCGAAGTCGTCACTGCCGCAGGTCGCTa  >  8:221479/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGGCAACGAGAGCGACTGGTCATCGTCGGCAACGGCATGGTCGGCCACCATTGCGTCGAACAACTGGTCAGTCGCGGCGCCCTGCAGCGCTTCGAGGTGCGGGTATTCGGCGAAGAGCGCCAACGC‑GCGTATGACCGCGTGCACCTGTCCGAATACTTCGGCGGCAGCTGTGCCGAAACCCTGGCCCTGTGTGAGCACGATTTCTACGAGGCCAATGGCGTGCACCTGCACCTGGGTGAGGCCGTGCTGGAGATCGACCGCGAGCGCCGCGAAGTCGTCACTGCCGCAGGTCGCTA  >  NC_002947/1903767‑1904062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.