| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2295775 = | 36 (0.610) | 4 (0.080) | 4/214 | NT | 13.0% | intergenic (+21/+112) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein |
| ? | NC_002947 | 2295860 = | 24 (0.500) | intergenic (+106/+27) | PP_5496/PP_2023 | hypothetical protein/glutathione S‑transferase family protein | |||||
TGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2295940‑2295775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGCA > NC_002947/2295860‑2296005 TGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATTGCACCGGCTCTGCCGGTGTTCGCGG > 5:228008/1‑149 GAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGC > 1:326625/1‑149 GGCGGGCTTCGGAGCGGTTCACGGCAATCTTGGTCCGCTGAGTAAACATCGGGCTGCACATGGGTCCGTGTGGGTGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGATGTTCGCGGGCATGCCCGCTCC < 7:56745/149‑1 TTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCG > 1:47438/1‑116 TTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCG < 2:47438/116‑1 CACTTGGGTCCGTGGGGTAGGGGGCATGCCGGGGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGG < 6:3172/80‑1 CACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGG > 5:3172/1‑80 GGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCC > 6:174005/1‑149 CATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCCCCCCTC > 6:74984/1‑148 ATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACACGGCCCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTC > 5:31467/1‑147 ACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGC < 5:174005/149‑1 TTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTT > 5:177973/1‑149 CATGCCCGCTCCCACAAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCTGTTCGACCCCG < 5:74984/149‑1 GCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGC < 2:161664/107‑1 cgaTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAAC > 2:274218/4‑149 CGCTCCCACACGGACCCATGTGCAGCCCGATGGTTAATCAGCGGACCATGATGGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAAC < 2:292001/149‑1 CGCTCCCACACGGAACCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAAC < 8:230435/149‑1 CCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGC < 2:333828/149‑1 CCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCCAGCTCCGCACACGCTGATAAGCCGCCTCGGCGA < 1:241375/119‑1 CCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGG < 2:191758/147‑1 CCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGA > 2:241375/1‑118 ACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGCA > 3:180866/1‑149 TGGCTGGAGGGGTGGCTGGCTTCGGAGCTGTTCAAGGCAATCATGGTCCGCTGATTAAACATCGGGCTGCACATGGGTCCGTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2295940‑2295775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAG‑CCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGCA > NC_002947/2295860‑2296005 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |