New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2465533 =	46 (0.780)	5 (0.090)	5/246	NT	9.7%	coding (105/1353 nt)	PP_2157	sensor histidine kinase
	?	NC_002947	2465573 =	50 (0.900)					coding (65/1353 nt)	PP_2157	sensor histidine kinase

TGATCCACACCGTCCGCGGCATGGGTTACGTACTCGAAGAGCGCACCGAGTGATGCGCCGGGTTTCCCTCGGCAGCCGCCTGGCCCTGCTGTTCGCCGCCTGCACCGCCACCGTCTCGCTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2465686‑2465533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgagACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGTGGATCAGCTTGTTGGGGTGCGGGTCGTCGATT  >  NC_002947/2465573‑2465712                                                                                                                                                                                                                                                                                                        TGATCCACACCGTCCGCGGCATGGGTTACGTACTCGAAGAGCGCACCGAGTGATGCGCCGGGTTTCCCTCGGCAGCCGCCTGGCCCTGCTGTTCGCCGCCTGCACCGCCACCGTCTCGCTGGGCGCCGGTCTGCTGTTCAGCCGGGC                                                                                                                                                     >  6:139189/1‑147       ACACCGTCCGCGGCATGGGTTACGTACTCGAAGAGCGCACCGAGTGATGCGCCGGGTTTCCCTCGGCAGCCGCCTGGCCCTGCTGTTCGCCGCCTGCACCGCCACCGTCTCGCTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAG                                                                                                                                              >  1:212769/1‑148                                                                                                                  TCTCGCTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGT                                  >  3:301698/1‑149                                                                                                                    TCGCTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAGACGGTGGCGGCGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGTG                                 >  8:350064/1‑148                                                                                                                      GCTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGTGGAT                              >  5:285564/1‑149                                                                                                                       CTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAG                                                            <  2:127973/118‑1                                                                                                                                    TGCTGTTCAGCCGGGCCAGCGAGACGGTGGCGGCGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGTGGATCAGCTTGTTGGGGT                <  7:350064/149‑1                                                                                                                                                  GCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGTGGATCAGCTTGTTGGGGTGCGGGTCGTCGATT  <  6:285564/149‑1                                                                                                                                                        GAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACG                                                        <  1:176683/89‑1                                                                                                                                                        GAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACG                                                        >  2:176683/1‑89                                                                                                                                                                                                                                                                                                        TGATCCACACCGTCCGCGGCATGGGTTACGTACTCGAAGAGCGCACCGAGTGATGCGCCGGGTTTCCCTCGGCAGCCGCCTGGCCCTGCTGTTCGCCGCCTGCACCGCCACCGTCTCGCTGGGCGCCGGTCTGCTGTTCAGCCGGGCCAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2465686‑2465533 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgagACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGTGGATCAGCTTGTTGGGGTGCGGGTCGTCGATT  >  NC_002947/2465573‑2465712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.