New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2465533 =	46 (0.780)	5 (0.090)	5/246	NT	9.7%	coding (105/1353 nt)	PP_2157	sensor histidine kinase
	?	NC_002947	2465573 =	50 (0.900)					coding (65/1353 nt)	PP_2157	sensor histidine kinase

GTCGGCCTGGTGACTCAGTTCATCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGT  >  NC_002947/2465392‑2465680                                                                                                                                              |                                                                                                                                                    gTCGGCCTGGTGACTCAGTTCATCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGCTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTgg                                                                                                                                              <  6:219501/149‑1 (MQ=255)  aatcgacgacccgcaccccaacaagctgatccacaccgtccgcggcatgggttacgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcaccgccaccgtCTCGCTGGc                                                                                                                                             <  6:285564‑M1/9‑1 (MQ=255)   cGGCCTGGTGACTCAGTTCATCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGcc                                                                                                                                            <  2:208461/149‑1 (MQ=255)               tCAGTTCATCGCGCAGGGCCGGCAGGCGGGGCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAAcag                                                                                                                                 >  1:30300/1‑148 (MQ=255)               tCAGTTCATCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAAcag                                                                                                                                 >  3:77001/1‑148 (MQ=255)                accccaacaagctgatccacaccgtccgcggcatgggttacgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcgccgccaccgtCTCGCTGGCCCGGCTGAAcagca                                                                                                                               <  7:350064‑M1/23‑1 (MQ=255)                 aGTTCATCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAAcag                                                                                                                                 >  1:220132/1‑146 (MQ=255)                      aTCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCgg                                                                                                                         >  8:298223/1‑149 (MQ=255)                              gggCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGc                                                                                                                 >  1:138266/1‑149 (MQ=255)                              atccacaccgtccgcggcatgggttacgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcaccgccaccgtCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGc                                                                                                                 >  5:285564‑M1/113‑149 (MQ=255)                                gCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCga                                                                                                               <  8:205965/149‑1 (MQ=255)                                 cacaccgtccgcggcatgggttacgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcgccgccaccgtCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCga                                                                                                               >  8:350064‑M1/110‑148 (MQ=255)                                  acaccgtccgcggcatgggttacgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcaccgccaccgtCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCgaga                                                                                                             >  3:301698‑M1/109‑149 (MQ=255)                                    gCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACg                                                                                                           <  7:298223/149‑1 (MQ=255)                                       ggCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTg                                                                                                        <  2:30300/149‑1 (MQ=255)                                                 gAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCa                                                                                                <  7:169475/147‑1 (MQ=255)                                                 gAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAgg                                                                                              <  7:156663/149‑1 (MQ=255)                                                       atcaGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCgg                                                                                                    >  2:97387/1‑137 (MQ=255)                                                       atcaGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCgg                                                                                                    <  1:97387/137‑1 (MQ=255)                                                       atcaGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGgcggcg                                                                                         >  1:195213/1‑148 (MQ=255)                                                       atcaGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGGTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGgcggcg                                                                                         >  6:122377/1‑148 (MQ=255)                                                        cgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcaccgccaccgtctc                                                                                                                                                   >  2:176683‑M1/87‑89 (MQ=255)                                                        cgtactcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcaccgccaccgtctc                                                                                                                                                   <  1:176683‑M1/3‑1 (MQ=255)                                                            ctcgaagagcgcaccgagtgatgcgccgggtttccctcggcagccgcctggccctgctgttcgccgcctgcaccgccaccgtCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAg                                                                                                                  <  2:127973‑M1/36‑1 (MQ=255)                                                            ccGTGCTGACGCCAGCCAGTTGCGTCAGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCAGGCTGAACAGCAGACAGTCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGagccgc                                                                                   >  8:324830/1‑144 (MQ=255)                                                               tGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAgg                                                                                <  6:378480/149‑1 (MQ=255)                                                                 cTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAggg                                                                               <  2:50449/148‑1 (MQ=255)                                                                 cTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGc                                                                              >  1:146710/1‑149 (MQ=255)                                                                     cGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAg                                                                           <  8:92164/148‑1 (MQ=255)                                                                      gccagccaGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAggc                                                                         >  7:89900/1‑149 (MQ=255)                                                                        cagccagTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAAcag                                                                                                                                 >  1:98652/1‑91 (MQ=255)                                                                        cagccagTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAAcag                                                                                                                                 <  2:98652/91‑1 (MQ=255)                                                                             agTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGcc                                                                  >  5:139189/1‑149 (MQ=255)                                                                               ttGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGa                                                                <  2:255108/149‑1 (MQ=255)                                                                                       gAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGCCGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGAGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAAcc                                                        >  5:73951/1‑149 (MQ=255)                                                                                       gAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAAcc                                                        >  3:270037/1‑149 (MQ=255)                                                                                            aaTGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGgcg                                                   >  2:88684/1‑149 (MQ=255)                                                                                             aTGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGgcgc                                                  <  5:122377/149‑1 (MQ=255)                                                                                                    gcgcGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTc                                           >  6:235028/1‑149 (MQ=255)                                                                                                      gcgAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCCGCGCGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAACCCCGGCGCATCACTCgg                                         >  4:329321/1‑149 (MQ=255)                                                                                                       cgAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGt                                        <  6:40147/149‑1 (MQ=255)                                                                                                             cagcagTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGctc                                  >  2:212769/1‑149 (MQ=255)                                                                                                                  gttgttGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGa                             <  8:89900/149‑1 (MQ=255)                                                                                                                   ttgttgGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAg                            <  2:220132/149‑1 (MQ=255)                                                                                                                     gttgGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGt                           <  6:335807/148‑1 (MQ=255)                                                                                                                     gttgGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGt                           >  5:335807/1‑148 (MQ=255)                                                                                                                        ggTCGAGTTCGACGAAGTGCACCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGCCGGCTGACGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGGACg                        >  4:240763/1‑148 (MQ=255)                                                                                                                              gTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCa                 <  2:138266/149‑1 (MQ=255)                                                                                                                               ttCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCAt                >  2:55639/1‑149 (MQ=255)                                                                                                                                  gacgaAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTgcg                                     <  6:8611/125‑1 (MQ=255)                                                                                                                                  gacgaAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTgcg                                     >  5:8611/1‑125 (MQ=255)                                                                                                                                  gacgaAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGcc             >  7:245781/1‑149 (MQ=255)                                                                                                                                   acgaAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCcg            >  5:191525/1‑149 (MQ=255)                                                                                                                                       aGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGa        >  2:360163/1‑149 (MQ=255)                                                                                                                                           ctgctCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTgc                                      >  5:123674/1‑115 (MQ=255)                                                                                                                                           ctgctCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTgc                                      <  6:123674/115‑1 (MQ=255)                                                                                                                                              CTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGgtgt  >  1:212769‑M1/1‑148 (MQ=255)                                                                                                                                              |                                                                                                                                                    GTCGGCCTGGTGACTCAGTTCATCGCGCAGGGCCGGCAGGCGGGCCTGGAGCTCATCAGCCGTGCTGACGCCAGCCAGTTGCGTCCGAAACAATGACAGGCGCGAGTCCAGCAGTTGTTGGTCGAGTTCGACGAAGTGCTGCTCGCTGGCCCGGCTGAACAGCAGACCGGCGCCCAGCGAGACGGTGGCGGTGCAGGCGGCGAACAGCAGGGCCAGGCGGCTGCCGAGGGAAACCCGGCGCATCACTCGGTGCGCTCTTCGAGTACGTAACCCATGCCGCGGACGGTGT  >  NC_002947/2465392‑2465680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.