New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2471790	42 (0.710)	4 (0.070)	4/244	NT	9.0%	coding (177/483 nt)	PP_2166	anti‑anti‑sigma factor
	?	NC_002947	= 2471813	42 (0.770)					coding (200/483 nt)	PP_2166	anti‑anti‑sigma factor

CGAGCAGAGCGGTACCTTCGTACTGAAATTCGTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2471640‑2471790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgacagcTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATACTCTCGGTTTCAGTCAGGTCGATGACAATCGCCGAGAAGTTCAGCGCAGTGAAAATCTTCTCGATCGTCGCATCCAGCGCCGAACACAGGGTCAGGCGCACTTCACC  <  NC_002947/2471813‑2471674                                                                                                                                                                                                                                                                                                     CGAGCAGAGCGGTACCTTCGTACTGAAATTCGTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGA                                                                                                                                                  >  5:246531/1‑147  GAGCAGAGCGGTACCTTCGTACTGAAATTCGTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAG                                                                                                                                               >  8:110487/1‑149    GCAGAGCGGTACCTTCGTACTGAAATTCTTTTGTTAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATTCGACGATCTATAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGC                                                                                                                                              <  7:171945/148‑1                CTTCGTACTGAAATTCGTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGCTTCGCCAGCAGGC                                                                                                                                 >  2:93706/1‑149                                GTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGTTTCGCCAGCAGGCCCAGCGTGGTGCTGTC                                                                                                                 >  8:261961/1‑149                                     TGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGCTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATAC                                                                                                            <  1:93706/149‑1                                        AGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGTTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATACTCT                                                                                                         <  7:261961/149‑1                                                                                                                                               ATCGACAGCTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATACTCTCGGTTTCAGTCAGGTCGATGACAATCGCCGAGAAGTTCAGCGCAGTGAAAATCTTCTCGATCGTCGCATCCAGCGCCGAACACAGGGTCAGGCGCACTTCACC  <  5:150405/149‑1                                                                                                                                                      GCTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATACTCTCGGTTTCAGTCAGGTCGATGACAATCGCCGAGAAGTTCAGCGCAGTGAAAATCTTCTCGATCGTCGCATCCAGCGCCGAACACAGGGTCAGGCGC          >  1:172970/1‑134                                                                                                                                                      GCTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATACTCTCGGTTTCAGTCAGGTCGATGACAATCGCCGAGAAGTTCAGCGCAGTGAAAATCTTCTCGATCGTCGCATCCAGCGCCGAACACAGGGTCAGGCGC          <  2:172970/134‑1                                                                                                                                                                                                                                                                                                     CGAGCAGAGCGGTACCTTCGTACTGAAATTCGTTGGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGACCTGACTGAAACCGAGAGTATCGACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2471640‑2471790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgacagcTTCGCCAGCAGGCCCAGCGTGGTGCTGTCGATACTCTCGGTTTCAGTCAGGTCGATGACAATCGCCGAGAAGTTCAGCGCAGTGAAAATCTTCTCGATCGTCGCATCCAGCGCCGAACACAGGGTCAGGCGCACTTCACC  <  NC_002947/2471813‑2471674

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.