New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2471790	42 (0.710)	4 (0.070)	4/244	NT	9.0%	coding (177/483 nt)	PP_2166	anti‑anti‑sigma factor
	?	NC_002947	= 2471813	42 (0.770)					coding (200/483 nt)	PP_2166	anti‑anti‑sigma factor

GGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACC  >  NC_002947/2471674‑2471961                                                                                                                                              |                                                                                                                                                       ggTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAgctgtcgat                                                                                                                                               <  5:150405‑M2/149‑10 (MQ=255)   tGAAGTGAGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGAATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATca                                                                                                                                             >  8:69264/1‑148 (MQ=255)         gcgcCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAgc                                                                                                                                                      >  1:172970‑M2/1‑132 (MQ=255)         gcgcCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAgc                                                                                                                                                      <  2:172970‑M2/134‑3 (MQ=255)            ccTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGAc                                                                                                                                    <  6:291125/149‑1 (MQ=255)                aCCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGaa                                                                                                                                <  6:196754/149‑1 (MQ=255)                  ccTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAgg                                                                                                                              >  1:159455/1‑149 (MQ=255)                  ccTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAgg                                                                                                                              >  7:103480/1‑149 (MQ=255)                  ccTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAgg                                                                                                                              >  4:242235/1‑149 (MQ=255)                    tgtgTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGCACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGCAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGCAGGTg                                                                                                                            >  5:315923/1‑149 (MQ=255)                    tgtgTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGATAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTCTCGATACTGTCGCGACAGAAGGtc                                                                                                                            >  5:344781/1‑148 (MQ=255)                      tgtTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTgg                                                                                                                           <  2:159455/148‑1 (MQ=255)                      tgtTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTgg                                                                                                                           <  7:273518/148‑1 (MQ=255)                      tgtTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTgg                                                                                                                           <  7:269783/148‑1 (MQ=255)                        ttCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGc                                                                                                                         <  6:262957/148‑1 (MQ=255)                        ttCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGc                                                                                                                         <  3:242235/148‑1 (MQ=255)                           ggCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCctgc                                                                                                                     >  4:131013/1‑149 (MQ=255)                                     gCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACggt                                                                                                           >  2:303848/1‑149 (MQ=255)                                           aTCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCCCCCACTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGgtggtg                                                                                                       <  1:308077/149‑1 (MQ=255)                                            tCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACt                                                                                                    <  3:131013/149‑1 (MQ=255)                                               agtagaTTTTCAGTGGGCTGAACTTCTCGGGGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTTTCGACAGCACCACGCTGGGCCTGCTGTCGAAGTTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTAc                                                                                                  <  6:344781/145‑1 (MQ=255)                                                gaagaTTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTAcc                                                                                                 >  5:10315/1‑148 (MQ=255)                                                        tCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGa                                                                                         <  3:300477/148‑1 (MQ=255)                                                               gcTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCAc                                                                               <  6:246531/149‑1 (MQ=255)                                                                     cTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAg                                                                                                                                  >  5:167232/1‑94 (MQ=255)                                                                     cTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAg                                                                                                                                  <  6:167232/94‑1 (MQ=255)                                                                         tcGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGAGAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTg                                                                       >  4:211812/1‑147 (MQ=255)                                                                          cGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTAACAATCCGGA‑‑CATTTAACGGTTATTGCAg                                                                    >  2:290878/1‑149 (MQ=255)                                                                           ggCGATTCTCATCGCC‑‑CTGACTGAACCCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGGCGATCCTGTCGCGACAGACGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCa                                                                     <  8:103480/147‑1 (MQ=255)                                                                                  gTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATgg                                                             <  7:110487/148‑1 (MQ=255)                                                                                   tCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATc                                                                                             <  8:48681/117‑1 (MQ=255)                                                                                   tCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATc                                                                                             >  7:48681/1‑117 (MQ=255)                                                                                                  tgaAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGgtgt                                              >  5:312050/1‑149 (MQ=255)                                                                                                       ccGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGgt                                                <  6:280719/142‑1 (MQ=255)                                                                                                       ccGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGgt                                                >  5:280719/1‑142 (MQ=255)                                                                                                        cGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACa                                        >  5:249677/1‑149 (MQ=255)                                                                                                          agagTATCGACAGCACCACGCTGGGCCTGCTGGCGAAactgtcgatactctcggtttcagtcaggtcgatgacaatcgccgagaagttcagcgcagtgaaaatcttctcgatcgtcgcatccagcgccgaacacagggtcaggcgcact                                        <  7:261961‑M2/149‑113 (MQ=255)                                                                                                          agagTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACAtc                                      >  7:95578/1‑149 (MQ=255)                                                                                                             gTATCGACAGCACCACGCTGGGCCTGCTGGCGAAgctgtcgatactctcggtttcagtcaggtcgatgacaatcgccgagaagttcagcgcagtgaaaatcttctcgatcgtcgcatccagcgccgaacacagggtcaggcgcacttca                                     <  1:93706‑M2/149‑116 (MQ=255)                                                                                                                tCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGtcga                                 <  8:95578/148‑1 (MQ=255)                                                                                                                  gACAGCACCACGCTGGGCCTGCTGGCGAAactgtcgatactctcggtttcagtcaggtcgatgacaatcgccgagaagttcagcgcagtgaaaatcttctcgatcgtcgcatccagcgccgaacacagggtcaggcgcacttcaccaac                                >  8:261961‑M2/1‑29 (MQ=255)                                                                                                                   aCAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGtt                                             >  4:336265/1‑133 (MQ=255)                                                                                                                   aCAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGtt                                             <  3:336265/133‑1 (MQ=255)                                                                                                                   aCAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGtcgatcga                             >  2:134864/1‑149 (MQ=255)                                                                                                                     aGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGAcc                           >  5:48368/1‑149 (MQ=255)                                                                                                                      tcaccacGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGACCCATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGAc                            <  1:290878/148‑1 (MQ=255)                                                                                                                          cacGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGTTGTTCAACATCGTCGATCGACCGATAc                      >  8:157933/1‑149 (MQ=255)                                                                                                                                 ggCCTGCTGGCGAAGCTGGCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCAc               <  6:150405/149‑1 (MQ=255)                                                                                                                                  gCCTGCTGGCGAAgctgtcgatactctcggtttcagtcaggtcgatgacaatcgccgagaagttcagcgcagtgaaaatcttctcgatcgtcgcatccagcgccgaacacagggtcaggcgcacttcaccaacgaatttcagtacgaag                >  2:93706‑M2/1‑13 (MQ=255)                                                                                                                                  gCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCAcc              >  2:62011/1‑149 (MQ=255)                                                                                                                                              aGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACTGATACCCTGCACCGATTGCCTGAcc  >  1:79798/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                       GGTGAAGTGCGCCTGACCCTGTGTTCGGCGCTGGATGCGACGATCGAGAAGATTTTCACTGCGCTGAACTTCTCGGCGATTGTCATCGAC‑‑CTGACTGAAACCGAGAGTATCGACAGCACCACGCTGGGCCTGCTGGCGAAGCTGTCGATCCTGTCGCGACAGAAGGTGGGCCTGCTGCCGACGGTGGTGACTACCAATCCGGA‑‑CATTTCACGGTTATTGCAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACC  >  NC_002947/2471674‑2471961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.