New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2879841 =	59 (1.000)	4 (0.070)	4/248	NT	7.4%	coding (224/900 nt)	PP_2534	LysR family transcriptional regulator
	?	NC_002947	2879921 =	44 (0.790)					coding (144/900 nt)	PP_2534	LysR family transcriptional regulator

CTGCCGCCCGAGCGCTAGGCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2879994‑2879841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggtACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATCTCGCCGGATCTGCCACCGAAGTCCATTT  >  NC_002947/2879921‑2880066                                                                                                                                                                                                                                                                                                              CTGCCGCCCGAGCGCTAGGCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACG                                                                                                                                                          <  4:110408/148‑1   GCCGCCCGAGCGCTAGCCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCG                                                                                                                                                       >  7:38631/1‑149      GCCCGAGCGCTAGGCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGGGT                                                                                                                                                    >  6:187891/1‑149               CTAGGCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCG                                                                                                                                                       <  5:146487/137‑1               CTAGGCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCG                                                                                                                                                       >  6:146487/1‑137                                                                       GGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGGGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTC                                                                                   >  5:193252/1‑149                                                                        GGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGGGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCG                                                                                  >  1:143556/1‑149                                                                         GTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGGGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGG                                                                                 >  2:28413/1‑149                                                                                                 CCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGG                                                                                                                                                      >  7:113352/1‑56                                                                                                 CCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGG                                                                                                                                                      <  8:113352/56‑1                                                                                                                            GAGAGGCCTACCTGCGCGGTGCACGGCGGGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATC                              <  2:143556/149‑1                                                                                                                                                    GGCGGGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATCTCGCCGGATCTGCCACCGAAGTCC      <  8:199270/149‑1                                                                                                                                                       ggaTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATCTCGCCGGATCTGCCACCGAAGTCCATT   >  3:132407/4‑149                                                                                                                                                        GGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATCTCGCCGGATCTGCCACCGAAGTCCATTT  <  3:110408/149‑1                                                                                                                                                        GGTACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATCTCGCCGGATCTGCCACCGAAGTCCATTT  <  6:158595/149‑1                                                                                                                                                                                                                                                                                                              CTGCCGCCCGAGCGCTAGGCCTGACGCCCTCGGCGGTCAGCCGCATTCTCGCCCGCACCGAACAGCGCCTGGGTACCCGCCTGCTGCTGCGCACGACCCGGGCGCTCACCCTTACCCCCGAGGGAGAGGCCTACCTGCGCGGTGCACGGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2879994‑2879841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggtACCCAGGCGCTGTTCGGTGCGGGCGAGAATGCGGCTGACCGCCGAGGGCGTCAGGCCTAGCGCTCGGGCGGCAGCAGACAGGCTGCCCGCTTGCGCCACCTTGGCAAAAATCTCCATCTCGCCGGATCTGCCACCGAAGTCCATTT  >  NC_002947/2879921‑2880066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.