New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3854146	66 (1.120)	3 (0.050)	3/248	NT	5.2%	coding (49/396 nt)	PP_3402	hypothetical protein
	?	NC_002947	= 3854217	46 (0.830)					intergenic (‑23/+98)	PP_3402/PP_3403	hypothetical protein/quercetin 2,3‑dioxygenase

ATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3854080‑3854146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCATGCGCAATATCAATTGGCGCCCCGCCCGACAAAGGCGTACTTCCATACAACAGGCCATCCCACAGAG  <  NC_002947/3854217‑3854071                                                                                                                                                                                                                        ATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCATG                                                                   <  5:33385/149‑1      CTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCAT                                                                    <  5:248604/143‑1      CTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCAT                                                                    >  6:248604/1‑143                                                              TCGGCCGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCATGCGCAATATCAATTGGCGCCCCGCCCGACAAAGGCGTACTTCCATACAACAGGCCATCCCA       >  4:56789/1‑148                                                                GGCCGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCATGCGCAATATCAATTGGCGCCCCGCCCGACAAAGGCGTACTTCCATACAACAGGCCATCCCACA     <  6:322892/148‑1                                                                  CCGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCATGCGCAATATCAATTGGCGCCCCGCCCGACAAAGGCGTACTTCCATACAACAGGCCATCCCACAGAG  <  5:141956/149‑1                                                                                                                                                                                                                        ATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3854080‑3854146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccGCCGCGGGGAATCTTCCACTAAGGTGCTAGAGGATTCCCCGCATGCTCATTGCCGGGGAGCATGGTCAGCTGGCCGAGCATGCGCAATATCAATTGGCGCCCCGCCCGACAAAGGCGTACTTCCATACAACAGGCCATCCCACAGAG  <  NC_002947/3854217‑3854071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.