New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3854146	66 (1.120)	3 (0.050)	3/248	NT	5.2%	coding (49/396 nt)	PP_3402	hypothetical protein
	?	NC_002947	= 3854217	46 (0.830)					intergenic (‑23/+98)	PP_3402/PP_3403	hypothetical protein/quercetin 2,3‑dioxygenase

CTCTGTGGGATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCTGCCCAAACCGCCCG  >  NC_002947/3854071‑3854363                                                                                                                                                   |                                                                                                                                                   ctctGTGGGATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCgg                                                                                                                                                  <  5:141956‑M2/149‑3 (MQ=255)    tgtgGGATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCggcc                                                                                                                                                <  6:322892‑M2/148‑5 (MQ=255)      tgGGATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCggccga                                                                                                                                              >  4:56789‑M2/1‑142 (MQ=255)       gggATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAgt                                                                                                                                            >  5:193030/1‑149 (MQ=255)            ggCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTc                                                                                                                                        <  4:304783/148‑1 (MQ=255)               cTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGTTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAAt                                                                                                                                    <  5:216134/149‑1 (MQ=255)                    gtATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCAt                                                                                                                                >  2:136019/1‑148 (MQ=255)                     tATGGAAGTACGCCTTTGTCGGGCCGGGCGCGAATTGATCTTGCCCATGCTCCGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTTGCACCTTCGTGGAAGATTCCCGTCGGCGGCCGAGTGTTCGAATGCATTa                                                                                                                              <  8:135377/149‑1 (MQ=255)                       tGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCa                                                                                                                                 >  3:138743/1‑144 (MQ=255)                       tGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCa                                                                                                                                 <  4:138743/144‑1 (MQ=255)                       tGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAg                                                                                                                             >  3:11704/1‑148 (MQ=255)                          aaGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGa                                                                                                                         <  6:141956/149‑1 (MQ=255)                                gCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAac                                                                                                                   <  1:136019/149‑1 (MQ=255)                                      gTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAAcgacga                                                                                                              <  8:11286/148‑1 (MQ=255)                                       tCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGt                                                                                                            <  5:322892/149‑1 (MQ=255)                                         gggcggggcgCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCAt                                                                                                                                >  6:61039/1‑127 (MQ=255)                                         gggcggggcgCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCAt                                                                                                                                <  5:61039/127‑1 (MQ=255)                                         gggcggggcgCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTgg                                                                                                          >  6:319449/1‑149 (MQ=255)                                              gggcgCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGTGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCg                                                                                                     <  5:319449/149‑1 (MQ=255)                                                  gcCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTc                                                                                                  >  3:202311/1‑148 (MQ=255)                                                     aaTTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAAcgacga                                                                                                              >  3:80704/1‑133 (MQ=255)                                                     aaTTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAAcgacga                                                                                                              <  4:80704/133‑1 (MQ=255)                                                        tGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAgg                                                                                           >  7:153717/1‑149 (MQ=255)                                                                  cATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCggccgagcatgcgcaatatcaattggcgccccgcccgacaaaggcgtacttccatacaacaggccat                                                                                 <  5:33385‑M2/149‑68 (MQ=255)                                                                   aTGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCggccgagcatgcgcaatatcaattggcgccccgcccgacaaaggcgtacttccatacaacag                                                                                      <  5:248604‑M2/143‑63 (MQ=255)                                                                   aTGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCggccgagcatgcgcaatatcaattggcgccccgcccgacaaaggcgtacttccatacaacag                                                                                      >  6:248604‑M2/1‑81 (MQ=255)                                                                      cTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGcc                                                                              <  4:11704/148‑1 (MQ=255)                                                                       tCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTAACCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGAAGAGTGGTGTCGGTCAACTAGGCGTTGGACAGGccc                                                                             >  4:175091/1‑148 (MQ=255)                                                                          gCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGc                                                                         >  8:40058/1‑149 (MQ=255)                                                                                  aCCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGaaa                                                                  <  8:153717/148‑1 (MQ=255)                                                                                  aCCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAg                                                                 >  1:30593/1‑149 (MQ=255)                                                                                    cATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGc                                                               >  3:34804/1‑149 (MQ=255)                                                                                         tCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGccaac                                                           >  7:227939/1‑148 (MQ=255)                                                                                           cccGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTg                                                                                                           <  5:351578/98‑1 (MQ=255)                                                                                           cccGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTg                                                                                                           >  6:351578/1‑98 (MQ=255)                                                                                                       cATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAgtgt                                            <  7:40058/149‑1 (MQ=255)                                                                                                                   ccTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTccc                                >  1:48539/1‑149 (MQ=255)                                                                                                                     tctAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCct                              >  4:106469/1‑149 (MQ=255)                                                                                                                         gCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCctc                             <  7:262620/146‑1 (MQ=255)                                                                                                                           aCCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTc                        <  2:48539/149‑1 (MQ=255)                                                                                                                             cTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCt                      >  3:68314/1‑149 (MQ=255)                                                                                                                                 gTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCAt                  >  2:318054/1‑149 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTg                                                                                      >  5:226326/1‑80 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTg                                                                                      <  6:221164/80‑1 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTg                                                                                      <  6:226326/80‑1 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTg                                                                                      >  5:221164/1‑80 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTcccc                               >  1:15725/1‑135 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTcccc                               <  2:15725/135‑1 (MQ=255)                                                                                                                                  tGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATc                 >  2:82010/1‑149 (MQ=255)                                                                                                                                    gAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCt                <  3:167623/148‑1 (MQ=255)                                                                                                                                    gAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCTg               <  2:30593/149‑1 (MQ=255)                                                                                                                                           ccccGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCTGCCCaaa         <  6:193030/148‑1 (MQ=255)                                                                                                                                             ccGCGGCGGACGAGTGTTCGAATGGAGTAGCAGACTTAACGACGATTGGTCTCTGTCAACTAGTCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGAGCGGCGCCTCCCCTCTCGTCCTGCATCTGCCCAAACCg      <  8:72426/149‑1 (MQ=255)                                                                                                                                              cgcgGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCTGCCCAAACCGc     >  6:318720/1‑149 (MQ=255)                                                                                                                                                 ggcggcCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCTGCCCAAACCGCCCg  <  4:34804/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CTCTGTGGGATGGCCTGTTGTATGGAAGTACGCCTTTGTCGGGCGGGGCGCCAATTGATATTGCGCATGCTCGGCCAGCTGACCATGCTCCCCGGCAATGAGCATGCGGGGAATCCTCTAGCACCTTAGTGGAAGATTCCCCGCGGCGGCCGAGTGTTCGAATGCATTAGCAGACTTAACGACGAGTGGTCTCGGTCAACTAGGCGTTGGCCAGGCCCCAGCCGGGAAAGGCCAACCAATTGCATCAGTGTGCGGCGCCTCCCCTCTCGTCCTGCATCTGCCCAAACCGCCCG  >  NC_002947/3854071‑3854363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.