New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4239611	37 (0.630)	3 (0.050)	3/248	NT	7.8%	coding (679/900 nt)	PP_3717	LuxR family transcriptional regulator
	?	NC_002947	= 4239634	36 (0.650)					coding (656/900 nt)	PP_3717	LuxR family transcriptional regulator

GCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4239458‑4239611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccTGCAGGCAGCGTTCGACAGCTTCGGCTGCCAGGTGCTGACCGACCGCGAACGGGAAGTGGCGCACATGATCCTGCGCGGGCACTCGGTGAAATCTACCGCGCTGGAGTTGGGTATTTCGCCGGAGACCGTGCGCATGCACCGCAAGAA  <  NC_002947/4239634‑4239487                                                                                                                                                                                                                                                                                                                GCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTG                                                                                                                                                            <  7:151430/148‑1  CGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTGTACGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGGGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGC                                                                                                                                                          <  5:100539/149‑1  CGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGG                                                                                                                                                           >  2:208116/1‑148                                      GTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCTGCAGGCAGCGTTCGACAGCTTCGGCTGCCAG                                                                                                                      <  5:50991/149‑1                                          ATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCTGCAGGCAGCGTTCGACAGCTTCGGCTGCC                                                                                                                        >  1:301009/1‑143                                          ATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCCTGCAGGCAGCGTTCGACAGCTTCGGCTGCC                                                                                                                        <  2:301009/143‑1                                                                                                                                                     GCAGCCTGCAGGCAGCGTTCGACAGCTTCGGCTGCCAGGTGCTGACCGACCGCGAACGGGAAGTGGCGCACATGATCCCGCGCGGGCACTCGGTGAAATCTACCGCGCTGGAGTTGGGTATTTCGCCGGAGACCGTGCGCATGCACCGC       <  8:226475/149‑1                                                                                                                                                        GCCTGCAGGCAGCGTTCGACAGCTTCGGCTGCCAGGTGCTGACCGACCGCGAACGGGAAGTGGCGCACATGATCCTGCGCGGGCACTCGGTGAAATCTACCGCGCTGGAGTTGGGTATTTCGCCGGAGACCGTGCGCATGCACCGC       >  5:142714/1‑146                                                                                                                                                          CTGCAGGCAGCGTTCGACAGCTTCGGCTGCCAGGTGCTGACCGACCGCGAACGGGAAGTGGCGCACATGATCCTGCGCGGGCACTCGGTGAAATCTACCGCGCTGGAGTTGGGTATTTCGCCGGAGCCCGTGCGCATGCACCGCAAGAA  >  5:117918/1‑149                                                                                                                                                                                                                                                                                                                GCGAGTTGATCTCAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCAGCACCTGGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4239458‑4239611 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccTGCAGGCAGCGTTCGACAGCTTCGGCTGCCAGGTGCTGACCGACCGCGAACGGGAAGTGGCGCACATGATCCTGCGCGGGCACTCGGTGAAATCTACCGCGCTGGAGTTGGGTATTTCGCCGGAGACCGTGCGCATGCACCGCAAGAA  <  NC_002947/4239634‑4239487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.