New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4239611	37 (0.630)	3 (0.050)	3/248	NT	7.8%	coding (679/900 nt)	PP_3717	LuxR family transcriptional regulator
	?	NC_002947	= 4239634	36 (0.650)					coding (656/900 nt)	PP_3717	LuxR family transcriptional regulator

TTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGAACAGGCT  >  NC_002947/4239487‑4239782                                                                                                                                                     |                                                                                                                                                     ttCTTGCGGTGCATGCGCACGGGCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAg                                                                                                                                                     >  5:117918‑M2/1‑148 (MQ=255)      gCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCGGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgc                                                                                                                                                <  8:226475‑M2/149‑7 (MQ=255)      gCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAggc                                                                                                                                                   >  5:142714‑M2/1‑143 (MQ=255)            cATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCt                                                                                                                                          >  6:307230/1‑149 (MQ=255)              tGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCg                                                                                                                                        <  7:350613/149‑1 (MQ=255)                 gcACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGtt                                                                                                                                     >  4:75063/1‑149 (MQ=255)                 gcACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGtt                                                                                                                                     >  3:92851/1‑149 (MQ=255)                   aCGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGa                                                                                                                                   <  6:10228/149‑1 (MQ=255)                    cGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGAt                                                                                                                                  <  5:313785/149‑1 (MQ=255)                         tcCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAgc                                                                                                                             >  2:326413/1‑149 (MQ=255)                             gCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGccc                                                                                                                         <  1:208116/149‑1 (MQ=255)                                       cAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGt                                                                                                               <  1:326413/149‑1 (MQ=255)                                               gcgcGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCgg                                                                                                       <  5:307230/149‑1 (MQ=255)                                                    gTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCAt                                                                                                   >  4:338956/1‑148 (MQ=255)                                                                      ccGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTcgcg                                                                                <  3:75063/149‑1 (MQ=255)                                                                       cgcgCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTcgcg                                                                                >  1:190112/1‑148 (MQ=255)                                                                            aGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCAt                                                                          >  5:270976/1‑149 (MQ=255)                                                                              gATCATGTGCGCCACTTCCCGTTCGCGGTCGGTCTAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATc                                                                         >  1:50425/1‑149 (MQ=255)                                                                                       cgcCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCCCCAgc                                                                <  6:116786/148‑1 (MQ=255)                                                                                         ccACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgca                                                             >  4:174829/1‑149 (MQ=255)                                                                                         ccACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgca                                                             >  7:193244/1‑149 (MQ=255)                                                                                          cACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgcac                                                            <  3:152354/149‑1 (MQ=255)                                                                                          cACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgcac                                                            <  4:92851/149‑1 (MQ=255)                                                                                                        ggtcggtc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGAcc                                              >  3:273076/1‑149 (MQ=255)                                                                                                            ggtc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGcc                                          <  8:193244/149‑1 (MQ=255)                                                                                                              tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAAc                                                       >  2:269759/1‑134 (MQ=255)                                                                                                              tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAAc                                                       <  1:269759/134‑1 (MQ=255)                                                                                                              tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCg                                        >  3:242971/1‑149 (MQ=255)                                                                                                              tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCg                                        <  7:226475/149‑1 (MQ=255)                                                                                                                      cTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcatgcac                                 <  5:50991‑M2/149‑118 (MQ=255)                                                                                                                      cTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGtt                                   >  4:58154/1‑147 (MQ=255)                                                                                                                      cTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGtt                                   >  1:140287/1‑147 (MQ=255)                                                                                                                        ggCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcat                                     >  1:301009‑M2/1‑30 (MQ=255)                                                                                                                        ggCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcat                                     <  2:301009‑M2/143‑114 (MQ=255)                                                                                                                         gCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAg                                <  2:190112/147‑1 (MQ=255)                                                                                                                         gCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGgc                              >  1:309518/1‑149 (MQ=255)                                                                                                                         gCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGgc                              <  2:140287/149‑1 (MQ=255)                                                                                                                           aGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGgcgc                            >  6:279489/1‑149 (MQ=255)                                                                                                                                aaGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGcc                       >  1:67698/1‑149 (MQ=255)                                                                                                                                     gTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGCCCTGCCCGGCGTTCAGGCGCGTGCCGCTg                   >  5:326878/1‑148 (MQ=255)                                                                                                                                      tCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCa                 <  6:348348/149‑1 (MQ=255)                                                                                                                                              tgcctgcAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTgg          >  2:71890/1‑148 (MQ=255)                                                                                                                                               gcctgcAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGaa        >  2:204315/1‑149 (MQ=255)                                                                                                                                                 ctgcAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGAACa      <  5:279489/149‑1 (MQ=255)                                                                                                                                                  tgcAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGAACAg     >  7:289719/1‑149 (MQ=255)                                                                                                                                                   gcAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGGCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGAACAgg    <  6:270976/149‑1 (MQ=255)                                                                                                                                                     aGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGAACAGGCt  <  2:309518/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTGCCGCTGCAGCCCTGGAACAGGCT  >  NC_002947/4239487‑4239782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.