New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4239611	37 (0.630)	3 (0.050)	3/248	NT	7.8%	coding (679/900 nt)	PP_3717	LuxR family transcriptional regulator
	?	NC_002947	= 4239634	36 (0.650)					coding (656/900 nt)	PP_3717	LuxR family transcriptional regulator

CAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTG  >  NC_002947/4239470‑4239759                                                                                                                                                |                                                                                                                                                     cAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTg                                                                                                                                               >  5:348348/1‑149 (MQ=255)  aaGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGCTGCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTg                                                                                                                                               <  1:261296/149‑1 (MQ=255)  aaGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAg                                                                                                                                                  <  4:365058/145‑1 (MQ=255)  aaGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCt                                                                                                                                                <  5:42663/147‑1 (MQ=255)    gCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCg                                                                                                                                            <  8:320187/149‑1 (MQ=255)       tCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAAc                                                                                                                                         >  5:116786/1‑149 (MQ=255)              cAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGctgcc                                                                                                                                   <  3:13410/148‑1 (MQ=255)                  ttCTTGCGGTGCATGCGCACGGGCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAg                                                                                                                              >  5:117918‑M2/1‑148 (MQ=255)                       gCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCGGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgc                                                                                                                         <  8:226475‑M2/149‑7 (MQ=255)                       gCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAggc                                                                                                                            >  5:142714‑M2/1‑143 (MQ=255)                          gTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCtgcaggcagcgttcgacagcttcggctgccag                                                                                                                      <  5:50991‑M1/149‑33 (MQ=255)                             cATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCt                                                                                                                   >  6:307230/1‑149 (MQ=255)                              aTGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCtgcaggcagcgttcgacagcttcggctgcc                                                                                                                        >  1:301009‑M1/1‑113 (MQ=255)                              aTGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCtgcaggcagcgttcgacagcttcggctgcc                                                                                                                        <  2:301009‑M1/143‑31 (MQ=255)                               tGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCg                                                                                                                 <  7:350613/149‑1 (MQ=255)                                  gcACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGtt                                                                                                              >  4:75063/1‑149 (MQ=255)                                  gcACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGtt                                                                                                              >  3:92851/1‑149 (MQ=255)                                    aCGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGa                                                                                                            <  6:10228/149‑1 (MQ=255)                                     cGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGAt                                                                                                           <  5:313785/149‑1 (MQ=255)                                          tcCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAgc                                                                                                      >  2:326413/1‑149 (MQ=255)                                             ggCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAg                                                                                                                                                  <  1:48906/102‑1 (MQ=255)                                             ggCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAg                                                                                                                                                  >  2:48906/1‑102 (MQ=255)                                              gCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGccc                                                                                                  <  1:208116/149‑1 (MQ=255)                                                        cAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGt                                                                                        <  1:326413/149‑1 (MQ=255)                                                                gcgcGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCgg                                                                                <  5:307230/149‑1 (MQ=255)                                                                     gTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCAt                                                                            >  4:338956/1‑148 (MQ=255)                                                                                       ccGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTcgcg                                                         <  3:75063/149‑1 (MQ=255)                                                                                        cgcgCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTcgcg                                                         >  1:190112/1‑148 (MQ=255)                                                                                             aGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCAt                                                   >  5:270976/1‑149 (MQ=255)                                                                                               gATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTCTAGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATc                                                  >  1:50425/1‑149 (MQ=255)                                                                                                        c‑gcCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCCCCAgc                                         <  6:116786/148‑1 (MQ=255)                                                                                                           ccACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgca                                      >  4:174829/1‑149 (MQ=255)                                                                                                           ccACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgca                                      >  7:193244/1‑149 (MQ=255)                                                                                                            cACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgcac                                     <  4:92851/149‑1 (MQ=255)                                                                                                            cACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGcgcac                                     <  3:152354/149‑1 (MQ=255)                                                                                                                          ggtcggtc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGAcc                       >  3:273076/1‑149 (MQ=255)                                                                                                                              ggtc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGcc                   <  8:193244/149‑1 (MQ=255)                                                                                                                                tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAAc                                >  2:269759/1‑134 (MQ=255)                                                                                                                                tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAAc                                <  1:269759/134‑1 (MQ=255)                                                                                                                                tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCg                 <  7:226475/149‑1 (MQ=255)                                                                                                                                tc‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCg                 >  3:242971/1‑149 (MQ=255)                                                                                                                                        cTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcatgcac          <  5:50991‑M2/149‑118 (MQ=255)                                                                                                                                        cTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGtt            >  1:140287/1‑147 (MQ=255)                                                                                                                                        cTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGtt            >  4:58154/1‑147 (MQ=255)                                                                                                                                          ggCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcat              <  2:301009‑M2/143‑114 (MQ=255)                                                                                                                                          ggCAGCCGAAGCTGTCGAACGCTGCCTGCAggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcat              >  1:301009‑M2/1‑30 (MQ=255)                                                                                                                                           gCAGCCtgcaggcagcgttcgacagcttcggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcccgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcatgcaccgc       <  8:226475‑M1/149‑144 (MQ=255)                                                                                                                                           gCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAg         <  2:190112/147‑1 (MQ=255)                                                                                                                                           gCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGgc       <  2:140287/149‑1 (MQ=255)                                                                                                                                           gCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGgc       >  1:309518/1‑149 (MQ=255)                                                                                                                                             aGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGgcgc     >  6:279489/1‑149 (MQ=255)                                                                                                                                              gCCtgcaggcagcgttcgacagcttcggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagaccgtgcgcatgcaccgc       >  5:142714‑M1/1‑3 (MQ=255)                                                                                                                                                ctgcaggcagcgttcgacagcttcggctgccaggtgctgaccgaccgcgaacgggaagtggcgcacatgatcctgcgcgggcactcggtgaaatctaccgcgctggagttgggtatttcgccggagcccgtgcgcatgcaccgcaagaa  >  5:117918‑M1/1‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     CAAGCTTCATGTACAGGTTCTTGCGGTGCATGCGCACGGTCTCCGGCGAAATACCCAACTCCAGCGCGGTAGATTTCACCGAGTGCCCGCGCAGGATCATGTGC‑GCCACTTCCCGTTCGCGGTCGGTC‑AGCACCTGGCAGCCGAAGCTGTCGAACGCTGCCTGCAGGCTGCCGCGCTCGGTTGATGCAGCGCCCGGTTCCAGGTTGTGTCGGGCATAACGCCCCAGCAGTTCGCGCACCATCGGCTCCAGCGCACGCAACAGGTCGACCTGCCCGGCGTTCAGGCGCGTG  >  NC_002947/4239470‑4239759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.