| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4290087 = | 57 (0.970) | 4 (0.070) | 4/250 | NT | 6.8% | coding (2500/3468 nt) | PP_3761 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4290156 = | 56 (1.000) | coding (2431/3468 nt) | PP_3761 | two‑component system sensor histidine kinase/response regulator | |||||
CATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4290240‑4290087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGC > NC_002947/4290156‑4290299 CATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGC < 3:208137/149‑1CATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGC < 3:54180/149‑1 TGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA < 8:347182/149‑1 TGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA < 7:110791/149‑1 AGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGC < 3:83622/149‑1 GCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA > 5:8872/1‑135 GCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA < 6:8872/135‑1 GTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA < 3:89679/127‑1 GTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA > 4:89679/1‑127 GGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGC < 8:298773/120‑1 GGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGC > 7:298773/1‑120 GCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCT > 7:59420/1‑149 CTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCT > 5:277172/1‑148 ACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGG < 6:277172/149‑1 ACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA > 2:173686/1‑60 ACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCA < 1:173686/60‑1 GCCTCAAGGAGCAGGCCAGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCG < 8:59420/149‑1 CAGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGC < 7:347182/149‑1 CAGCAGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGC < 5:379113/149‑1 CATGAGCTGGGCTATAGCTGCCTGGTGGCCCATGGCGCCGACGAAGGCTTCGAGCTGGCAGCCCAGTACATTCCGGATGCGATCCTGCTGGACATGCGCCTGCCCGACCACTCGGGCCTGACTGTCCTGCAGCGCCTCAAGGAGCAGGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4290240‑4290087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaGGATCGCATCCGGAATGTACTGGGCTGCCAGCTCGAAGCCTTCGTCGGCGCCATGGGCCACCAGGCAGCTATAGCCCAGCTCATGGGCCAGGTCGAAGAGGATGCGGGCAAAGTTGGGCTCGTCTTCGATTACCAGAATGCAGC > NC_002947/4290156‑4290299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |