New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4986305	53 (0.900)	3 (0.050)	3/250	NT	5.1%	coding (547/753 nt)	flgA	flagella basal body P‑ring formation protein
	?	NC_002947	= 4986339	61 (1.090)					coding (581/753 nt)	flgA	flagella basal body P‑ring formation protein

CCCGCTCAAGCGCGACAACACGGTCGGCGAAGGTGACGTGGCCCTGCGCGAGCGCGATGTCGGCACCCTGGGCCAGGGCTTTCTGACCGAGCTGGACCAGGCGGTGGGCATGAAGATGCTGCGCCCCACGGTGATCGACCAGGTGCTCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4986154‑4986305 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacccTTGCGCACCACCTCGGCCTGTTCCAGATGTTGCGGGGTGAGCACCTGGTCGATCACCGTGGGGCGCAGCATCTTCATGCCCACCGCCTGGTCCAGCTCGGTCAGAAAGCCCTGGCCCA  <  NC_002947/4986339‑4986222                                                                                                                                                                                                                                                                                CCCGCTCAAGCGCGACAACACGGTCGGCGAAGGTGACGTGGCCCTGCGCGAGCGCGATGTCGGCACCCTGGGCCAGGGCTTTCTGACCGAGCTGGACCAGGCGGTGGGCATGGAGATGCTGCGCCCCACGGTGATCGACCAGGTGCTCA                                                                                                                           >  1:15738/1‑149                                          CCCCGCGCGAGCGCGATGTCGGCACCCTGGGCCAGGGCTTTCTGACCGAGCTGGACCAGGCGGTGGGCATGAAGATGCTGCGCCCCACGGTGATCGACCAGGTGCTCACCCTTGCGCACCACCTCGGCCTGTTCCAGATGTTGCGGGGT                                                                                  <  1:158485/149‑1                                           CCTGCGCGAGCGCGATGTCGGCACCCTGGGCCAGGGCTTTCTGACCGAGCTGGACCAGGCGGTGGGCATGAAGATGCTGCGCCCCACGGTGATCGACCAGGTGCTCACCCTTGCGCACCACCTCGGCCTGTTCCAGATGTTGCGGGGTG                                                                                 >  8:186356/1‑149                                               CGCGAGCGCGATGTCGGCACCCTGGGCCAGGGCTTTCTGACCGAGCTGGACCAGGCGGTGGGCATGAAGATGCTGCGCCCCACGGTGATCGACCAGGTGCTCACCCTTGCGCACCACCTCGGCCTGTTCCAGATGTTGCGGGGTGAGC                                                                              <  7:186356/148‑1                                                                                                                                                   TCACCCTTGCGCACCACCTCGGCCTGTTCCAGATGTTGCGGGGTGAGCACCTGGTCGATCACCGTGGGGCGCAGCATCTTCATGCCCACCGCCTGGTCCAGCTCGGTCAGAAAGCCCTGGCCCA  >  6:15276/1‑124                                                                                                                                                                                                                                                                                CCCGCTCAAGCGCGACAACACGGTCGGCGAAGGTGACGTGGCCCTGCGCGAGCGCGATGTCGGCACCCTGGGCCAGGGCTTTCTGACCGAGCTGGACCAGGCGGTGGGCATGAAGATGCTGCGCCCCACGGTGATCGACCAGGTGCTCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4986154‑4986305 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacccTTGCGCACCACCTCGGCCTGTTCCAGATGTTGCGGGGTGAGCACCTGGTCGATCACCGTGGGGCGCAGCATCTTCATGCCCACCGCCTGGTCCAGCTCGGTCAGAAAGCCCTGGCCCA  <  NC_002947/4986339‑4986222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.