New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4986472	50 (0.850)	4 (0.070)	3/254	NT	7.2%	coding (714/753 nt)	flgA	flagella basal body P‑ring formation protein
	?	NC_002947	= 4986487	54 (0.950)					coding (729/753 nt)	flgA	flagella basal body P‑ring formation protein

AGGCCGAGGTGGTGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4986321‑4986472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGGGCCGGTCACCCTGGCCTTGACCACGCGTTTGGAATTGAGGTTGCGTACCCGAATCTGCTCGCTCAGGCCGCCCTTGCTCAAGGCTTCGCCCGGCATGCGCACACTCAGGCTGCCACTGCGGGCAATGATCACCACCTGGTCACCC  <  NC_002947/4986487‑4986340                                                                                                                                                                                                                                                                                                              AGGCCGAGGTGGTGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAG                                                                                                                                                         <  7:312448/149‑1             TGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGCCGG                                                                                                                                              >  5:34427/1‑148                                                    GCAGCCTTTGTGTGCGGATGCCGGGCGAAGCGTTGAGCTAGGGCGGCCTGAGCGAGCAGTTTCGGGTACCCAACCTCAATTCCAAACGCGTGGTCAAGGCCCGGGCGGGTCACCCTGGCCTTGACCACGCGTTTGGAATTGAGGTTGCG                                                                                                      <  6:34427/149‑1                                                                                   CTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCCGGGCCGGTCACCCTGGCCTTGACCAC                                                                                                                           >  5:179368/1‑97                                                                                   CTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCCGGGCCGGTCACCCTGGCCTTGACCAC                                                                                                                           <  6:179368/97‑1                                                                                                                                                      GCCCGGGCCGGTCACCCTGGCCTTGACCACGCGTTTGGAATTGAGGTTGCGTACCCGAATCTGCTCGCTCAGGCCGCCCTTGCTCAAGGCTTCGCCCGGCATGCGCACACTCAGGCTGCCACTGCGGGCAATGATCACCACCTGGTC      <  6:267103/147‑1                                                                                                                                                        CCGGGCCGGTCACCCTGGCCTTGACCACGCGTTTGGAATTGAGGTTGCGTACCCGAATCTGCTCGCTCAGGCCGCCCTTGCTCAAGGCTTCGCCCGGCATGCGCACACTCAGGCTGCCACTGCGGGCAATGATCACCACCTGGTCACCC  >  4:133424/1‑149                                                                                                                                                        CCGGGCCGGTCACCCTGGCCTTGACCACGCGTTTGGAATTGAGGTTGCGTACCCGAATCTGCTCGCTCAGGCCGCCCTTGCTCAAGGCTTCGCCCGGCATGCGCACACTCAGGCTGCCACTGCGGGCAATGATCACCACCTGGTCACCC  <  8:86887/149‑1                                                                                                                                                                                                                                                                                                              AGGCCGAGGTGGTGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4986321‑4986472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGGGCCGGTCACCCTGGCCTTGACCACGCGTTTGGAATTGAGGTTGCGTACCCGAATCTGCTCGCTCAGGCCGCCCTTGCTCAAGGCTTCGCCCGGCATGCGCACACTCAGGCTGCCACTGCGGGCAATGATCACCACCTGGTCACCC  <  NC_002947/4986487‑4986340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.