New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4986472	50 (0.850)	4 (0.070)	3/254	NT	7.2%	coding (714/753 nt)	flgA	flagella basal body P‑ring formation protein
	?	NC_002947	= 4986487	54 (0.950)					coding (729/753 nt)	flgA	flagella basal body P‑ring formation protein

GGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGG  >  NC_002947/4986340‑4986628                                                                                                                                                    |                                                                                                                                              gggTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGg                                                                                                                                              <  8:86887‑M2/149‑2 (MQ=255) gggTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGg                                                                                                                                              >  4:133424‑M2/1‑148 (MQ=255)     gACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGggc                                                                                                                                            <  6:267103‑M2/147‑4 (MQ=255)         aGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTc                                                                                                                                      >  3:215235/1‑149 (MQ=255)             ggtgATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAgg                                                                                                                                  <  8:216594/149‑1 (MQ=255)              gtgATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGt                                                                                                                                 <  4:215235/149‑1 (MQ=255)                 aTCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCa                                                                                                                               <  6:83680/148‑1 (MQ=255)                  tCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAg                                                                                                                              <  2:294332/148‑1 (MQ=255)                          cGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGc                                                                                                                     <  4:174575/149‑1 (MQ=255)                              gTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGc                                                                                                                 <  3:347896/149‑1 (MQ=255)                                 gCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccac                                                                                                              >  6:125829/1‑149 (MQ=255)                                  cAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccacc                                                                                                             <  6:377291/149‑1 (MQ=255)                                   aGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccacc                                                                                                             <  2:301232/148‑1 (MQ=255)                                   aGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccacc                                                                                                             >  1:301232/1‑148 (MQ=255)                                       tGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGAtt                                                                                                        >  1:7345/1‑149 (MQ=255)                                        gAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTg                                                                                                       >  3:333345/1‑149 (MQ=255)                                         aGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTgc                                                                                                      >  7:123822/1‑149 (MQ=255)                                             tgCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCt                                                                                                   <  4:225693/148‑1 (MQ=255)                                                  aTGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGt                                                                                             >  5:36597/1‑149 (MQ=255)                                                   tGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTg                                                                                            <  4:353827/149‑1 (MQ=255)                                                      cGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAgg                                                                                         <  8:123822/149‑1 (MQ=255)                                                      cGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAg                                                                                          >  3:189490/1‑148 (MQ=255)                                                           gAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAgg                                                                                                                      >  6:63909/1‑115 (MQ=255)                                                           gAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAgg                                                                                                                      <  5:63909/115‑1 (MQ=255)                                                             aGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCt                                                                                  >  6:11915/1‑149 (MQ=255)                                                                 ttGAGCTAGGGCGGCCTGTGCGAGCAGATTGGGGTACGGTTCCTGAATTGCAAACGCGTGGTCTAGGCGTGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGt                                                                                                                             <  8:223684/102‑1 (MQ=255)                                                                 ttGAGCAAGGGCGGCCTGAGAGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTCGTCAAGGCCAGGGTGACCGGCCCGGGCCAGCTCGAGGTCAGt                                                                                                                             >  7:223684/1‑102 (MQ=255)                                                                     gCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTaa                                                                          <  5:17787/149‑1 (MQ=255)                                                                                        gcAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGt                                                       >  3:311587/1‑149 (MQ=255)                                                                                         cAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGtt                                                      >  1:29891/1‑149 (MQ=255)                                                                                           gATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTcg                                                    >  8:104171/1‑149 (MQ=255)                                                                                           gATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTcg                                                    <  5:267103/149‑1 (MQ=255)                                                                                            aTTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTcgc                                                   >  5:187141/1‑149 (MQ=255)                                                                                                   tACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTTAGAACACGGGTTCGCGGGCTTg                                            >  2:129738/1‑149 (MQ=255)                                                                                                    aCGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGc                                           >  6:159664/1‑149 (MQ=255)                                                                                                     cGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGc                                           <  6:36597/148‑1 (MQ=255)                                                                                                     cGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCCGCCCGggccttgaccacgcgtttggaattgaggttgggtacccgaaactgctcgctcaggccgccctagctcaacgcttcgcccggcatccgcacacaaaggctgc                                          <  6:34427‑M2/149‑102 (MQ=255)                                                                                                      gCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGcc                                          >  1:346687/1‑148 (MQ=255)                                                                                                      gCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGcc                                          >  4:94477/1‑148 (MQ=255)                                                                                                          ccTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAg                                     >  8:185071/1‑149 (MQ=255)                                                                                                          ccTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAg                                     >  2:11665/1‑149 (MQ=255)                                                                                                                 tCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCaa                              >  5:73497/1‑149 (MQ=255)                                                                                                                   cAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAAt                             <  5:125829/148‑1 (MQ=255)                                                                                                                      aCGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCgg                                                 >  1:212462/1‑125 (MQ=255)                                                                                                                      aCGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCgg                                                 <  2:212462/125‑1 (MQ=255)                                                                                                                        gcgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt                       <  4:311587/149‑1 (MQ=255)                                                                                                                        gcgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt                       <  6:73497/149‑1 (MQ=255)                                                                                                                        gcgTGGGCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGCACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt                       <  2:93561/149‑1 (MQ=255)                                                                                                                         cgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTtg                      >  3:137915/1‑149 (MQ=255)                                                                                                                          gTGGTCAAGGCCAGGGTGACCGGCCCGggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaag                                                                         <  6:179368‑M2/97‑71 (MQ=255)                                                                                                                          gTGGTCAAGGCCAGGGTGACCGGCCCGggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaag                                                                         >  5:179368‑M2/1‑27 (MQ=255)                                                                                                                          gTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTtgt                     <  2:346687/149‑1 (MQ=255)                                                                                                                            ggTCCAGGCCAGGGTGCCCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc                   <  8:292919/149‑1 (MQ=255)                                                                                                                            ggTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc                   <  7:86887/149‑1 (MQ=255)                                                                                                                                 aGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAATACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTa                >  2:196421/1‑147 (MQ=255)                                                                                                                                    ccAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACTGGCGGCAATGCATTTGTGCCTAAAGtt           <  1:11665/149‑1 (MQ=255)                                                                                                                                      aGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTta         <  3:94477/149‑1 (MQ=255)                                                                                                                                        ggTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTtata       >  5:279128/1‑149 (MQ=255)                                                                                                                                           gACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCg    <  5:11915/149‑1 (MQ=255)                                                                                                                                            aCCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCgg   <  4:189490/149‑1 (MQ=255)                                                                                                                                             ccGGCCCTggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaaggcttcgcccggcatgcgcacactcaggctgccactgcgggcaatgatcaccacctggtcacccttgcgca   >  5:34427‑M2/1‑8 (MQ=255)                                                                                                                                             ccGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCggg  >  1:201816/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                              GGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTTATATCGGG  >  NC_002947/4986340‑4986628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.