New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4986472	50 (0.850)	4 (0.070)	3/254	NT	7.2%	coding (714/753 nt)	flgA	flagella basal body P‑ring formation protein
	?	NC_002947	= 4986487	54 (0.950)					coding (729/753 nt)	flgA	flagella basal body P‑ring formation protein

AGGTGGTGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTT  >  NC_002947/4986327‑4986620                                                                                                                                                  |                                                                                                                                                     aGGTGGTGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAgg                                                                                                                                                   <  3:185105/149‑1 (MQ=255) aGGTGGTGCGCAAGGGGGACCAGGGGGTGATCATTGCCCGCAGGGGCAGCCTGAGGGGGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGACCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAACGCCacg                                                                                                                                                   <  2:289456/149‑3 (MQ=255)       tgCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCagggccgg                                                                                                                                              >  5:34427‑M1/1‑140 (MQ=255)          gcAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGc                                                                                                                                          >  3:133424/1‑149 (MQ=255)           cAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGcc                                                                                                                                         >  7:292919/1‑149 (MQ=255)              gggTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGg                                                                                                                                      <  8:86887‑M2/149‑2 (MQ=255)              gggTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGg                                                                                                                                      >  4:133424‑M2/1‑148 (MQ=255)                  gACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGggc                                                                                                                                    <  6:267103‑M2/147‑4 (MQ=255)                      aGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTc                                                                                                                              >  3:215235/1‑149 (MQ=255)                          ggtgATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAgg                                                                                                                          <  8:216594/149‑1 (MQ=255)                           gtgATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGt                                                                                                                         <  4:215235/149‑1 (MQ=255)                              aTCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCa                                                                                                                       <  6:83680/148‑1 (MQ=255)                               tCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAg                                                                                                                      <  2:294332/148‑1 (MQ=255)                                       cGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGc                                                                                                             <  4:174575/149‑1 (MQ=255)                                        gCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAgg                                                                                                                                                   >  8:343334/1‑110 (MQ=255)                                        gCAGGGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAgg                                                                                                                                                   <  7:343334/110‑1 (MQ=255)                                           gTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGc                                                                                                         <  3:347896/149‑1 (MQ=255)                                              gCAGCCTTTGTGTGCGGATGCCGGGCGAAGCGTTGAGCTAGGGCGGCCTGAGCGAGCAGTTTCGGGTACCCAACCTCAATTCCAAACGCGTGGTCAAGGCCcgggcgggtcaccctggccttgaccacgcgtttggaattgaggttgcg                                                                                                      <  6:34427‑M1/149‑49 (MQ=255)                                              gCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccac                                                                                                      >  6:125829/1‑149 (MQ=255)                                               cAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccacc                                                                                                     <  6:377291/149‑1 (MQ=255)                                                aGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccacc                                                                                                     >  1:301232/1‑148 (MQ=255)                                                aGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGccacc                                                                                                     <  2:301232/148‑1 (MQ=255)                                                    tGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGAtt                                                                                                >  1:7345/1‑149 (MQ=255)                                                     gAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTg                                                                                               >  3:333345/1‑149 (MQ=255)                                                      aGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTgc                                                                                              >  7:123822/1‑149 (MQ=255)                                                          tgCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCt                                                                                           <  4:225693/148‑1 (MQ=255)                                                               aTGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGt                                                                                     >  5:36597/1‑149 (MQ=255)                                                                tGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTg                                                                                    <  4:353827/149‑1 (MQ=255)                                                                   cGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAgg                                                                                 <  8:123822/149‑1 (MQ=255)                                                                   cGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAg                                                                                  >  3:189490/1‑148 (MQ=255)                                                                        gAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAgg                                                                                                              <  5:63909/115‑1 (MQ=255)                                                                        gAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAgg                                                                                                              >  6:63909/1‑115 (MQ=255)                                                                          aGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCt                                                                          >  6:11915/1‑149 (MQ=255)                                                                             cTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCcgggccggtcaccctggccttgaccac                                                                                                                           <  6:179368‑M1/97‑28 (MQ=255)                                                                             cTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCcgggccggtcaccctggccttgaccac                                                                                                                           >  5:179368‑M1/1‑70 (MQ=255)                                                                              ttGAGCTAGGGCGGCCTGTGCGAGCAGATTGGGGTACGGTTCCTGAATTGCAAACGCGTGGTCTAGGCGTGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGt                                                                                                                     <  8:223684/102‑1 (MQ=255)                                                                              ttGAGCAAGGGCGGCCTGAGAGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTCGTCAAGGCCAGGGTGACCGGCCCGGGCCAGCTCGAGGTCAGt                                                                                                                     >  7:223684/1‑102 (MQ=255)                                                                                  gCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTaa                                                                  <  5:17787/149‑1 (MQ=255)                                                                                                     gcAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGt                                               >  3:311587/1‑149 (MQ=255)                                                                                                      cAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGtt                                              >  1:29891/1‑149 (MQ=255)                                                                                                        gATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTcg                                            <  5:267103/149‑1 (MQ=255)                                                                                                        gATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTcg                                            >  8:104171/1‑149 (MQ=255)                                                                                                         aTTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTcgc                                           >  5:187141/1‑149 (MQ=255)                                                                                                                tACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTTAGAACACGGGTTCGCGGGCTTg                                    >  2:129738/1‑149 (MQ=255)                                                                                                                 aCGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGc                                   >  6:159664/1‑149 (MQ=255)                                                                                                                  cGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGc                                   <  6:36597/148‑1 (MQ=255)                                                                                                                  cGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCCGCCCGggccttgaccacgcgtttggaattgaggttgggtacccgaaactgctcgctcaggccgccctagctcaacgcttcgcccggcatccgcacacaaaggctgc                                  <  6:34427‑M2/149‑102 (MQ=255)                                                                                                                   gCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGcc                                  >  4:94477/1‑148 (MQ=255)                                                                                                                   gCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGcc                                  >  1:346687/1‑148 (MQ=255)                                                                                                                       ccTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAg                             >  2:11665/1‑149 (MQ=255)                                                                                                                       ccTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAg                             >  8:185071/1‑149 (MQ=255)                                                                                                                              tCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCaa                      >  5:73497/1‑149 (MQ=255)                                                                                                                                cAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAAt                     <  5:125829/148‑1 (MQ=255)                                                                                                                                   aCGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCgg                                         >  1:212462/1‑125 (MQ=255)                                                                                                                                   aCGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCgg                                         <  2:212462/125‑1 (MQ=255)                                                                                                                                     gcgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt               <  6:73497/149‑1 (MQ=255)                                                                                                                                     gcgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt               <  4:311587/149‑1 (MQ=255)                                                                                                                                     gcgTGGGCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGCACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCAttt               <  2:93561/149‑1 (MQ=255)                                                                                                                                      cgTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTtg              >  3:137915/1‑149 (MQ=255)                                                                                                                                       gTGGTCAAGGCCAGGGTGACCGGCCCGggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaag                                                                 <  6:179368‑M2/97‑71 (MQ=255)                                                                                                                                       gTGGTCAAGGCCAGGGTGACCGGCCCGggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaag                                                                 >  5:179368‑M2/1‑27 (MQ=255)                                                                                                                                       gTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTtgt             <  2:346687/149‑1 (MQ=255)                                                                                                                                         ggTCCAGGCCAGGGTGCCCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc           <  8:292919/149‑1 (MQ=255)                                                                                                                                         ggTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGc           <  7:86887/149‑1 (MQ=255)                                                                                                                                              aGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAATACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTa        >  2:196421/1‑147 (MQ=255)                                                                                                                                                gCCcgggccggtcaccctggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaaggcttcgcccggcatgcgcacactcaggctgccactgcgggcaatgatcaccacctggtc      <  6:267103‑M1/147‑145 (MQ=255)                                                                                                                                                 ccAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACTGGCGGCAATGCATTTGTGCCTAAAGtt   <  1:11665/149‑1 (MQ=255)                                                                                                                                                  ccgggccggtcaccctggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaaggcttcgcccggcatgcgcacactcaggctgccactgcgggcaatgatcaccacctggtcaccc  >  4:133424‑M1/1‑1 (MQ=255)                                                                                                                                                  ccgggccggtcaccctggccttgaccacgcgtttggaattgaggttgcgtacccgaatctgctcgctcaggccgcccttgctcaaggcttcgcccggcatgcgcacactcaggctgccactgcgggcaatgatcaccacctggtcaccc  <  8:86887‑M1/149‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     AGGTGGTGCGCAAGGGTGACCAGGTGGTGATCATTGCCCGCAGTGGCAGCCTGAGTGTGCGCATGCCGGGCGAAGCCTTGAGCAAGGGCGGCCTGAGCGAGCAGATTCGGGTACGCAACCTCAATTCCAAACGCGTGGTCAAGGCCAGGGTGACCGGCCCGGGCCAGGTCGAGGTCAGTATGTAGGCTAGCCACCAGATTGCGCTGGCAGTGAGGAACCGCTTTTCCTAAACTGTGTCAGAACACGGGTTCGCGGGCTTGCCGACAGGCGGCAATGCATTTGTGCCTAAAGTTT  >  NC_002947/4986327‑4986620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.