| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5530084 = | 42 (0.710) | 6 (0.110) | 5/246 | NT | 12.8% | coding (13/717 nt) | livF‑II | ABC transporter ATP‑binding protein |
| ? | NC_002947 | 5530122 = | 42 (0.760) | coding (847/876 nt) | braF | ABC transporter ATP‑binding protein | |||||
GACATGGGCATGGTCATGAGCATCTCCGACCATATCGTGGTGCTGGACCACGGCAACGTGATTGCCGAAGGTGCGCCGCAGGACATCCGCCACAACCCGACGGTTATTGCCGCCTACCTGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5530239‑5530084‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATGTCGTG > NC_002947/5530122‑5530269 GACATGGGCATCGTCATGAGCATCTCCGACCATATCGTGGTGCTGGACCACGGCAACGTGATTGCCGAAGGTGCGCCGCAGGACATCCGCCACAACCCGACGGTTATTGCCGCCTACCTGGGTGCAGACGAAGAGGAACTGGTATGAGT < 6:71704/149‑1 GGCATGGTCATGAGCATCTCCGACCATATCGTGGTGCTGGACCACGGCAACGTGATTGCCGAAGGTGCGCCGCAGGACATCCGCCACAACCCGACGGTTATTGCCGCCTACCTGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACC > 5:78714/1‑148 GCATGGTCATGAGCATCTCCGACCATATCGTGGTGCTGGACCACGGCAACGTGATTGCCGAAGGTGCGCCGCAGGACATCCGCCACAACCCGACGGTTATTGCCGCCTACCTGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCA < 2:303590/149‑1 CGCCTACCTGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCCCAACGATATGGTCGGAGATGCTCAT > 5:272749/1‑149 GCCTACCTGGGTGCAGACGAAGAGGAACAGGTATGAGTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCAT > 8:34636/1‑148 TGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGC > 7:27029/1‑149 TGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGA < 1:338038/143‑1 TGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGA > 2:338038/1‑143 AAGATGAACTTGTATGCTTGCACCCAGGTATGCGGCAATAACCGGCGGGTTTTGGCGGATGTCCTGCGGCGCACCTTTGGCAATCACCTTTCCGTGGTCCAGCACCACGATATGGTCTGAGATGCTCATGACCATGCCCATGTCGTGCT < 6:272749/149‑1 CACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCCCGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATG > 7:262582/1‑149 AGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATGTCGTG < 7:34636/149‑1 GACATGGGCATGGTCATGAGCATCTCCGACCATATCGTGGTGCTGGACCACGGCAACGTGATTGCCGAAGGTGCGCCGCAGGACATCCGCCACAACCCGACGGTTATTGCCGCCTACCTGGGTGCAGACGAAGAGGAACTGGTATGAGTGCACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5530239‑5530084‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATGTCGTG > NC_002947/5530122‑5530269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |