New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5530084 =	42 (0.710)	6 (0.110)	5/246	NT	12.8%	coding (13/717 nt)	livF‑II	ABC transporter ATP‑binding protein
	?	NC_002947	5530122 =	42 (0.760)					coding (847/876 nt)	braF	ABC transporter ATP‑binding protein

ACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATGTCGTG  >  NC_002947/5529974‑5530269                                                                                                                                                     |                                                                                                                                                    aCCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAg                                                                                                                                                     >  5:244307/1‑149 (MQ=255)        gcgcCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAggcg                                                                                                                                              >  2:154300/1‑149 (MQ=255)        atgagcatctccgaccatatcgttgggctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAggcg                                                                                                                                              >  5:272749‑M1/104‑149 (MQ=255)        atgagcatctccgaccatatcgtggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCTGTTCCTCTTCGTCTGCACCCAGGTAggc                                                                                                                                               >  8:34636‑M1/104‑148 (MQ=255)               tCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATaa                                                                                                                                       <  5:211397/149‑1 (MQ=255)                       aCCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCgg                                                                                                                                <  6:244307/148‑1 (MQ=255)                                 ccTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGa                                                                                                                     >  5:55769/1‑149 (MQ=255)                                 ccTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGa                                                                                                                     <  5:240560/149‑1 (MQ=255)                                  cTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGAt                                                                                                                    <  5:49032/149‑1 (MQ=255)                                       tAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCt                                                                                                               >  8:97470/1‑149 (MQ=255)                                            tgCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTgcgg                                                                                                           <  7:97470/148‑1 (MQ=255)                                            agCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCTCTCATACAAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTgcggc                                                                                                          >  7:351399/2‑149 (MQ=255)                                                  gagaCTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCt                                                                                                    >  6:78714/1‑149 (MQ=255)                                                     aCTTTCTTCAGTGCCTGGATCGGCCCTTAGTACACGTCCAAGTCTTTCAGCTCGTGAATGGGTGCTCTCATACCTGTTCGTCTTCGTGTGCAGCCAGTTAGGCGGCAATAACCGTCGGGTTGTGGGTGATGTGCTGGGGCGCAGCTTc                                                                                                  <  8:20376/148‑1 (MQ=255)                                                      cTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCTCTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCgg                                                                                                <  8:351399/149‑1 (MQ=255)                                                       tttCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCgg                                                                                                >  3:328175/1‑148 (MQ=255)                                                       tttCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCgg                                                                                                >  2:257787/1‑148 (MQ=255)                                                              aGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCAGCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACg                                                                                        <  2:432/149‑1 (MQ=255)                                                                  ccTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCACGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTATGCGGCAATAACCGTCGGGTTGTGACGGATGACATGCGGCGCACCTTCGGCAATAACCTTGc                                                                                    >  5:313322/1‑149 (MQ=255)                                                                     ggATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGtt                                                                                      <  2:184800/144‑1 (MQ=255)                                                                     ggATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGtt                                                                                      >  1:184800/1‑144 (MQ=255)                                                                       aTCGTCCCATAGAACACGTCGAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTgg                                                                               <  6:313322/149‑1 (MQ=255)                                                                         agctccATAGAACCCGTCCACGTCTTTCAGCTCGAGACTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTc                                                                             <  8:242775/145‑1 (MQ=255)                                                                              cATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTc                                                                             >  7:242775/1‑144 (MQ=255)                                                                               aTAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGc                                                                         <  7:352361/147‑1 (MQ=255)                                                                               aTAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGc                                                                         >  8:352361/1‑147 (MQ=255)                                                                                     cacGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGat                                                                 <  4:328175/149‑1 (MQ=255)                                                                                         tCCCAGTCTTTCAGCTCGAGCCTGGGGGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGGCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATgg                                                             <  6:234396/149‑1 (MQ=255)                                                                                           cAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTc                                                           >  4:364874/1‑149 (MQ=255)                                                                                            aaGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCg                                                          <  8:85061/149‑1 (MQ=255)                                                                                              gTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGga                                                        <  5:153729/149‑1 (MQ=255)                                                                                                       cgcctacctgggtgcagacgaagaggaactggtatgagtgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCCCAACGATATGGTCGGAGATGCTCAt                                               >  5:272749‑M2/47‑149 (MQ=255)                                                                                                        tCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCAt                                               >  7:52789/1‑148 (MQ=255)                                                                                                        gcctacctgggtgcagacgaagaggaacaggtatgagtgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCAt                                               >  8:34636‑M2/46‑148 (MQ=255)                                                                                                               tgggtgcagacgaagaggaactggtatgagtgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGa                                             <  1:338038‑M2/105‑1 (MQ=255)                                                                                                               tgggtgcagacgaagaggaactggtatgagtgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGa                                             >  2:338038‑M2/39‑143 (MQ=255)                                                                                                               tgggtgcagacgaagaggaactggtatgagtgcacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGc                                       >  7:27029‑M2/39‑149 (MQ=255)                                                                                                               TGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGc                                       <  2:303590‑M1/149‑1 (MQ=255)                                                                                                                 GGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGcc                                      >  5:78714‑M1/1‑148 (MQ=255)                                                                                                                      ACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACGATGCCCATGTc                                <  6:71704‑M1/149‑1 (MQ=255)                                                                                                                          aTACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTc                                                 >  6:115743/1‑128 (MQ=255)                                                                                                                          aTACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTc                                                 <  5:115743/128‑1 (MQ=255)                                                                                                                          aTACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGt                              <  8:52789/147‑1 (MQ=255)                                                                                                                          aTACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGc                            >  8:213688/1‑149 (MQ=255)                                                                                                                          aTACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGc                            >  5:264785/1‑149 (MQ=255)                                                                                                                           aagatgaacttgtatgcttgcacccaGGTATGCGGCAATAACCGGCGGGTTTTGGCGGATGTCCTGCGGCGCACCTTTGGCAATCACCTTTCCGTGGTCCAGCACCACGATATGGTCTGAGATGCTCATGACCATGCCCATGTCGTGCt                           <  6:272749‑M2/123‑1 (MQ=255)                                                                                                                            aCCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGc                                                                         <  6:49624/102‑1 (MQ=255)                                                                                                                                  tCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCaa                    >  5:109007/1‑149 (MQ=255)                                                                                                                                   ccTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCaa                    <  6:55769/148‑1 (MQ=255)                                                                                                                                   ccTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCaa                    >  2:252834/1‑148 (MQ=255)                                                                                                                                   ccTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCaa                    <  1:252834/148‑1 (MQ=255)                                                                                                                                    ctctTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATc                      >  6:210167/1‑145 (MQ=255)                                                                                                                                    ctctTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATc                      <  5:210167/145‑1 (MQ=255)                                                                                                                                     tctTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAacac                 >  2:112933/1‑149 (MQ=255)                                                                                                                                               cacccaGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCCCGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATg       >  7:262582‑M2/7‑149 (MQ=255)                                                                                                                                                    aGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATGTCGTg  <  7:34636‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGCCCATGTCGTGCTCGATCAACACCACAGTGATGTCGTG  >  NC_002947/5529974‑5530269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.