New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5530084 =	42 (0.710)	6 (0.110)	5/246	NT	12.8%	coding (13/717 nt)	livF‑II	ABC transporter ATP‑binding protein
	?	NC_002947	5530122 =	42 (0.760)					coding (847/876 nt)	braF	ABC transporter ATP‑binding protein

TGGCCGAAAATCGACATCAGCAGGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGC  >  NC_002947/5529936‑5530232                                                                                                                                                     |                                                                                                                                                     cacgacatcactgtggtgttgatcgagcacgacatgggcatggtcatgagcatctccgaccatatcgtggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctacct                                                                                                                                                      <  7:34636‑M1/1‑1 (MQ=255)   gCCGAAAATCGACATCAGCAGGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATgg                                                                                                                                                    <  3:28207/149‑1 (MQ=255)   gCCGAAAATCGACATCAGCAGGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATg                                                                                                                                                     <  4:256889/148‑1 (MQ=255)     agAAAATCGACATCAGCAGGGTCGACTTGCCGGCACCGTTGGCGCCTATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTAAGTGCCTCGATCGCCCCATAGAACACGTCCAAGTCTTTCAGCTAGAGAATGCGt                                                                                                                                                  >  7:20376/2‑149 (MQ=38)      catcactgtggtgttgatcgagcacgacatgggcatggtcatgagcatctccgaccatatcggggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTg                                                                                                                                                 >  7:262582‑M1/144‑149 (MQ=255)              aCATCAGCAGGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATa                                                                                                                                         >  6:211397/1‑149 (MQ=255)                    gcagGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGtt                                                                                                                                   >  4:17009/1‑149 (MQ=255)                     cagGGTCGACTTTCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTc                                                                                                                                  <  1:237731/149‑1 (MQ=255)                     cagGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTg                                                                                                                                                 <  1:230152/134‑1 (MQ=255)                     cagGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTg                                                                                                                                                 >  2:230152/1‑134 (MQ=255)                     cagGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCATGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGtt                                                                                                                                   >  2:237731/1‑148 (MQ=255)                          agcacgacatgggcatggtcatgagcatctcagaccatatcgtggtgctggaccacggaaaggtgattgccaaaggtgcgccgcaggacatccgccaaaacccgccggttattgccgcataccTGGGTGCAAGCATACAAGTTCATCtt                                                                                                                             <  6:272749‑M1/26‑1 (MQ=255)                           cGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTc                                                                                                                            >  6:153729/1‑149 (MQ=255)                            gACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTc                                                                                                                            <  3:17009/148‑1 (MQ=255)                               ttGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCt                                                                                                                        >  7:85061/1‑149 (MQ=255)                                   cGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGCGACTTTCTTCAGTGCCTGGCTCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGccc                                                                                                                    >  5:234396/1‑147 (MQ=255)                                    ggCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGGACTCATACCAGATACTCTTCGTCTGCAcc                                                                                                                   >  6:49032/1‑149 (MQ=255)                                      gcatggtcatgagcatctccgaccatatcgtggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCa                                                                                                                 >  7:27029‑M1/112‑149 (MQ=255)                                      cACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCa                                                                                                                 <  6:310869/149‑1 (MQ=255)                                       aCCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAg                                                                                                                >  5:244307/1‑149 (MQ=255)                                            tcatgagcatctccgaccatatcgtggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCa                                                                                                                 <  1:338038‑M1/38‑1 (MQ=255)                                            tcatgagcatctccgaccatatcgtggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCa                                                                                                                 >  2:338038‑M1/106‑143 (MQ=255)                                              gcgcCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAggcg                                                                                                         >  2:154300/1‑149 (MQ=255)                                              atgagcatctccgaccatatcgttgggctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAggcg                                                                                                         >  5:272749‑M1/104‑149 (MQ=255)                                              atgagcatctccgaccatatcgtggtgctggaccacggcaacgtgattgccgaaggtgcgccgcaggacatccgccacaacccgacggttattgccgcctaccTGGGTGCACTCATACCTGTTCCTCTTCGTCTGCACCCAGGTAggc                                                                                                          >  8:34636‑M1/104‑148 (MQ=255)                                                     tCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATaa                                                                                                  <  5:211397/149‑1 (MQ=255)                                                             aCCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCgg                                                                                           <  6:244307/148‑1 (MQ=255)                                                                       ccTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGa                                                                                >  5:55769/1‑149 (MQ=255)                                                                       ccTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGa                                                                                <  5:240560/149‑1 (MQ=255)                                                                        cTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGAt                                                                               <  5:49032/149‑1 (MQ=255)                                                                             tAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCt                                                                          >  8:97470/1‑149 (MQ=255)                                                                                  tgCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTgcgg                                                                      <  7:97470/148‑1 (MQ=255)                                                                                  agCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCTCTCATACAAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTgcggc                                                                     >  7:351399/2‑149 (MQ=255)                                                                                        gagaCTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCt                                                               >  6:78714/1‑149 (MQ=255)                                                                                           aCTTTCTTCAGTGCCTGGATCGGCCCTTAGTACACGTCCAAGTCTTTCAGCTCGTGAATGGGTGCTCTCATACCTGTTCGTCTTCGTGTGCAGCCAGTTAGGCGGCAATAACCGTCGGGTTGTGGGTGATGTGCTGGGGCGCAGCTTc                                                             <  8:20376/148‑1 (MQ=255)                                                                                            cTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCTCTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCgg                                                           <  8:351399/149‑1 (MQ=255)                                                                                             tttCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCgg                                                           >  2:257787/1‑148 (MQ=255)                                                                                             tttCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCgg                                                           >  3:328175/1‑148 (MQ=255)                                                                                                    aGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCAGCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACg                                                   <  2:432/149‑1 (MQ=255)                                                                                                        ccTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCACGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTATGCGGCAATAACCGTCGGGTTGTGACGGATGACATGCGGCGCACCTTCGGCAATAACCTTGc                                               >  5:313322/1‑149 (MQ=255)                                                                                                           ggATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGtt                                                 >  1:184800/1‑144 (MQ=255)                                                                                                           ggATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGtt                                                 <  2:184800/144‑1 (MQ=255)                                                                                                             aTCGTCCCATAGAACACGTCGAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTgg                                          <  6:313322/149‑1 (MQ=255)                                                                                                               agctccATAGAACCCGTCCACGTCTTTCAGCTCGAGACTGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTc                                        <  8:242775/145‑1 (MQ=255)                                                                                                                    cATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTc                                        >  7:242775/1‑144 (MQ=255)                                                                                                                     aTAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGc                                    <  7:352361/147‑1 (MQ=255)                                                                                                                     aTAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGc                                    >  8:352361/1‑147 (MQ=255)                                                                                                                           cacGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGat                            <  4:328175/149‑1 (MQ=255)                                                                                                                               tCCCAGTCTTTCAGCTCGAGCCTGGGGGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGGCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATgg                        <  6:234396/149‑1 (MQ=255)                                                                                                                                 cAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTc                      >  4:364874/1‑149 (MQ=255)                                                                                                                                  aaGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCg                     <  8:85061/149‑1 (MQ=255)                                                                                                                                    gTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGga                   <  5:153729/149‑1 (MQ=255)                                                                                                                                              tCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCAt          >  7:52789/1‑148 (MQ=255)                                                                                                                                                     TGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGc  <  2:303590‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGGCCGAAAATCGACATCAGCAGGGTCGACTTGCCGGCACCGTTGGCGCCGATCAGGCTTACCGTCTCGCCCTCGTTAATGTGCATCGAGACTTTCTTCAGTGCCTGGATCGGCCCATAGAACACGTCCAAGTCTTTCAGCTCGAGAATGGGTGCACTCATACCAGTTCCTCTTCGTCTGCACCCAGGTAGGCGGCAATAACCGTCGGGTTGTGGCGGATGTCCTGCGGCGCACCTTCGGCAATCACGTTGCCGTGGTCCAGCACCACGATATGGTCGGAGATGCTCATGACCATGC  >  NC_002947/5529936‑5530232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.