New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5773685 = | 53 (0.900) | 3 (0.050) | 3/254 | NT | 5.8% | coding (248/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
? | NC_002947 | 5773720 = | 46 (0.810) | coding (283/657 nt) | betI | choline‑responsive transcriptional repressor BetI |
ATCGAAGTTGCCCTCGATGATCACTTTCAGGTGAGCGCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5773728‑5773685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG > NC_002947/5773720‑5773865 ATCGAAGTTGCCCTCGATGATCACTTTCAGGTGAGCGCGCGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAAC > 3:137885/1‑149 TCGAAGTTGCCCTCGATGATCACTTTCAGGTGAGCGCGCGGGCAACTTCGATGCCAGACAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAAC > 2:243723/1‑148 CGAAGTTGCCCTCGATGATCACTTTCAGGTGAGCGCGCGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGA > 6:101682/1‑149 GGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG > 5:172966/1‑149 GGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG > 5:50227/1‑149 GGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG > 6:226136/1‑149 ATCGAAGTTGCCCTCGATGATCACTTTCAGGTGAGCGCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5773728‑5773685 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG > NC_002947/5773720‑5773865 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |