New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5773685 =	53 (0.900)	3 (0.050)	3/254	NT	5.8%	coding (248/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773720 =	46 (0.810)					coding (283/657 nt)	betI	choline‑responsive transcriptional repressor BetI

GATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGAC  >  NC_002947/5773539‑5773827                                                                                                                                                   |                                                                                                                                               cggcggaactggcagcacaggttggaatacaagcggtggtcgttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGcc                                                                                                                                              >  5:172966‑M1/147‑149 (MQ=255) cggcggaactggcagcacaggttggaatacaagcggtggtcgttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGcc                                                                                                                                              >  5:50227‑M1/147‑149 (MQ=255) cggcggaactggcagcacaggttggaatacaagcggtggtcgttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGcc                                                                                                                                              >  6:226136‑M1/147‑149 (MQ=255)         gTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCt                                                                                                                                      <  8:2894/149‑1 (MQ=255)             ggCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCAcc                                                                                                                                  >  8:208299/1‑149 (MQ=255)                  gtgtgtCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGaaa                                                                                                                             <  4:5742/149‑1 (MQ=255)                       tCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCCTGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCAGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGa                                                                                                                         >  3:258797/1‑148 (MQ=255)                       tCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGat                                                                                                                        >  2:347867/1‑149 (MQ=255)                         gAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGatc                                                                                                                       <  1:362237/148‑1 (MQ=255)                             ggCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGatcatc                                                                                                                    >  7:162801/1‑147 (MQ=255)                                 tcatcaGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAggg                                                                                                               >  6:189344/1‑148 (MQ=255)                                  catcaGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGc                                                                                                              >  6:375699/1‑148 (MQ=255)                                      aGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACtt                                                                                                         >  7:142292/1‑149 (MQ=255)                                        tcgttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCg                                                                                                       >  6:101682‑M1/108‑149 (MQ=255)                                          gttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctgtctggcatcgaagttGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGa                                                                                                      >  2:243723‑M1/106‑148 (MQ=255)                                          gttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGAt                                                                                                     >  3:137885‑M1/106‑149 (MQ=255)                                            tactTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGa                                                                                                      >  5:220351/1‑146 (MQ=255)                                            tactTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGa                                                                                                      <  6:220351/146‑1 (MQ=255)                                                 tCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCTAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATgccagc                                                                                               <  5:252979/148‑1 (MQ=255)                                                       cAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCATAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAg                                                                                                                 >  3:99099/1‑124 (MQ=255)                                                       cAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCATAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAg                                                                                                                 <  4:99099/124‑1 (MQ=255)                                                        aaGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTaaa                                                                                       <  7:208299/149‑1 (MQ=255)                                                        aaGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTaaa                                                                                       <  8:162801/149‑1 (MQ=255)                                                          gAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACg                                                                                     >  1:68536/1‑149 (MQ=255)                                                          gAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCAACTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACg                                                                                     >  5:249926/1‑149 (MQ=255)                                                                 cTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCgg                                                                               >  5:262657/1‑148 (MQ=255)                                                                    aTCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAAt                                                                           >  8:6107/1‑149 (MQ=255)                                                                    aTCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAAt                                                                           >  5:368291/1‑149 (MQ=255)                                                                        cAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGaa                                                                        >  4:159666/1‑148 (MQ=255)                                                                         aGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGaaaa                                                                      <  8:142292/149‑1 (MQ=255)                                                                          gCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAAc                                                                     <  3:159666/149‑1 (MQ=255)                                                                           cgacgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAAcc                                                                    >  3:9398/1‑149 (MQ=255)                                                                            gacgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCATGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAATTGATCATCGAGGGCAAATTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCt                                                                   <  5:290268/149‑1 (MQ=255)                                                                             acgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTg                                                                  >  5:87053/1‑149 (MQ=255)                                                                             acgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTg                                                                  <  6:262657/149‑1 (MQ=255)                                                                               gaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGt                                                                <  6:87053/149‑1 (MQ=255)                                                                                aTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGtt                                                               <  6:368291/149‑1 (MQ=255)                                                                                     ttACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCt                                                          >  2:46088/1‑149 (MQ=255)                                                                                        catcatGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCt                                                       <  5:189344/149‑1 (MQ=255)                                                                                         atcatGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTg                                                      <  1:347867/149‑1 (MQ=255)                                                                                            atGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGa                                                                                                                  >  1:96390/1‑86 (MQ=255)                                                                                            atGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGa                                                                                                                  <  2:96390/86‑1 (MQ=255)                                                                                               aGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCaa                                                                            >  5:283659/1‑121 (MQ=255)                                                                                               aGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCaa                                                                            <  6:283659/121‑1 (MQ=255)                                                                                                gCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTc                                                >  1:64171/1‑148 (MQ=255)                                                                                                 aaTGCTCAACGAAGGCGTCAGAGCCCGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGATGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCa                                              <  4:258797/148‑1 (MQ=255)                                                                                                    gCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCa                                           >  6:179480/1‑149 (MQ=255)                                                                                                      tCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATg                                         >  1:370298/1‑149 (MQ=255)                                                                                                           gAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTCAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCAc                                      >  8:344175/1‑147 (MQ=255)                                                                                                            aaGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAg                                   <  5:375699/149‑1 (MQ=255)                                                                                                                 gTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGa                              >  1:143813/1‑149 (MQ=255)                                                                                                                    agagCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGc                                            >  1:111556/1‑132 (MQ=255)                                                                                                                    agagCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGc                                            <  2:111556/132‑1 (MQ=255)                                                                                                                     gagCACGTCGCCAGGCCCTGACAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCATCATGCACCAGCCCGATTTg                          <  6:249926/149‑1 (MQ=255)                                                                                                                           gTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAgg                    >  3:10737/1‑149 (MQ=255)                                                                                                                                     ccTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGa          <  1:46088/149‑1 (MQ=255)                                                                                                                                         aaaGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATcct      >  6:164237/1‑147 (MQ=255)                                                                                                                                          aaGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCTATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCaa      <  2:370298/148‑1 (MQ=255)                                                                                                                                             acgacAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGac  <  2:68536/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GATTGCCCGTTTGGCCGGTGTGTCGAACGGCATCATCAGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGAC  >  NC_002947/5773539‑5773827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.