New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5773685 =	53 (0.900)	3 (0.050)	3/254	NT	5.8%	coding (248/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	5773720 =	46 (0.810)					coding (283/657 nt)	betI	choline‑responsive transcriptional repressor BetI

AGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG  >  NC_002947/5773576‑5773865                                                                                                                                                 |                                                                                                                                                  aGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACtt                                                                                                                                               >  7:142292/1‑149 (MQ=255)   tcgttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCg                                                                                                                                             >  6:101682‑M1/108‑149 (MQ=255)     gttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctgtctggcatcgaagttGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGa                                                                                                                                            >  2:243723‑M1/106‑148 (MQ=255)     gttgatccgctgcaacctgtgcaaatcgggctggtgcatgctggaagcccagaaggccaaccaggttttcattgccgggccgtttacctggctggcatcgaagttGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGAt                                                                                                                                           >  3:137885‑M1/106‑149 (MQ=255)       tactTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGa                                                                                                                                            <  6:220351/146‑1 (MQ=255)       tactTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGa                                                                                                                                            >  5:220351/1‑146 (MQ=255)            tCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCTAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATgccagc                                                                                                                                     <  5:252979/148‑1 (MQ=255)                   aaGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTaaa                                                                                                                             <  8:162801/149‑1 (MQ=255)                   aaGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTaaa                                                                                                                             <  7:208299/149‑1 (MQ=255)                     gAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACg                                                                                                                           >  1:68536/1‑149 (MQ=255)                     gAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCAACTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACg                                                                                                                           >  5:249926/1‑149 (MQ=255)                            cTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCgg                                                                                                                     >  5:262657/1‑148 (MQ=255)                               aTCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAAt                                                                                                                 >  8:6107/1‑149 (MQ=255)                               aTCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAAt                                                                                                                 >  5:368291/1‑149 (MQ=255)                                   cAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGaa                                                                                                              >  4:159666/1‑148 (MQ=255)                                    aGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGaaaa                                                                                                            <  8:142292/149‑1 (MQ=255)                                     gCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAAc                                                                                                           <  3:159666/149‑1 (MQ=255)                                      cgacgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAAcc                                                                                                          >  3:9398/1‑149 (MQ=255)                                       gacgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCATGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAATTGATCATCGAGGGCAAATTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCt                                                                                                         <  5:290268/149‑1 (MQ=255)                                        acgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTg                                                                                                        >  5:87053/1‑149 (MQ=255)                                        acgaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTg                                                                                                        <  6:262657/149‑1 (MQ=255)                                          gaTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGt                                                                                                      <  6:87053/149‑1 (MQ=255)                                           aTGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGtt                                                                                                     <  6:368291/149‑1 (MQ=255)                                                ttACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCt                                                                                                >  2:46088/1‑149 (MQ=255)                                                   catcatGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCt                                                                                             <  5:189344/149‑1 (MQ=255)                                                    atcatGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTg                                                                                            <  1:347867/149‑1 (MQ=255)                                                          aGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCaa                                                                                                                  <  6:283659/121‑1 (MQ=255)                                                          aGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCaa                                                                                                                  >  5:283659/1‑121 (MQ=255)                                                           gCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTc                                                                                      >  1:64171/1‑148 (MQ=255)                                                            aaTGCTCAACGAAGGCGTCAGAGCCCGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGATGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCa                                                                                    <  4:258797/148‑1 (MQ=255)                                                               gCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCa                                                                                 >  6:179480/1‑149 (MQ=255)                                                                 tCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATg                                                                               >  1:370298/1‑149 (MQ=255)                                                                      gAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTCAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCAc                                                                            >  8:344175/1‑147 (MQ=255)                                                                       aaGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAg                                                                         <  5:375699/149‑1 (MQ=255)                                                                            gTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGa                                                                    >  1:143813/1‑149 (MQ=255)                                                                               agagCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGc                                                                                  >  1:111556/1‑132 (MQ=255)                                                                               agagCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGc                                                                                  <  2:111556/132‑1 (MQ=255)                                                                                gagCACGTCGCCAGGCCCTGACAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCATCATGCACCAGCCCGATTTg                                                                <  6:249926/149‑1 (MQ=255)                                                                                      gTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAgg                                                          >  3:10737/1‑149 (MQ=255)                                                                                                ccTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGa                                                <  1:46088/149‑1 (MQ=255)                                                                                                    aaaGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATcct                                            >  6:164237/1‑147 (MQ=255)                                                                                                     atcgaagttgccctcgatgatcactttcaggtgagcgcgcgggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAAc                                           >  3:137885‑M2/45‑149 (MQ=255)                                                                                                     aaGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCTATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCaa                                            <  2:370298/148‑1 (MQ=255)                                                                                                      tcgaagttgccctcgatgatcactttcaggtgagcgcgcgggcAACTTCGATGCCAGACAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAAc                                           >  2:243723‑M2/44‑148 (MQ=255)                                                                                                       cgaagttgccctcgatgatcactttcaggtgagcgcgcgggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGa                                         >  6:101682‑M2/43‑149 (MQ=255)                                                                                                        acgacAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGac                                        <  2:68536/149‑1 (MQ=255)                                                                                                                      gcTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGCTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTc                          <  7:6107/149‑1 (MQ=255)                                                                                                                       cTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTcc                         <  4:10737/149‑1 (MQ=255)                                                                                                                           ccTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCTATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTAGCAGCGGATCAACGACCACCGCTTGTATTCCAAcc                     >  6:13899/1‑149 (MQ=255)                                                                                                                            cTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTAtt                           <  4:159244/142‑1 (MQ=255)                                                                                                                            cTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACAAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTAtt                           >  3:159244/1‑142 (MQ=255)                                                                                                                                aaGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCtgtg                 <  2:64171/148‑1 (MQ=255)                                                                                                                                     atcatcGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGTACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGtgctgc             >  3:139957/1‑147 (MQ=255)                                                                                                                                        atcGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGtt        >  4:190977/1‑149 (MQ=255)                                                                                                                                              ggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTccgccg  >  5:172966‑M2/4‑149 (MQ=255)                                                                                                                                              ggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTccgccg  >  6:226136‑M2/4‑149 (MQ=255)                                                                                                                                              ggcAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTccgccg  >  5:50227‑M2/4‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  AGTCACTACTTTCGGGACAAGAACGGCCTGATCGCAGCGACGATGGGTTACATCATGAGCATGCTCAACGAAGGCGTCAGAGCACGTCGCCAGGCCCTGAAAGACGACAGCCCGCGCGCTCACCTGAAAGTGATCATCGAGGGCAACTTCGATGCCAGCCAGGTAAACGGCCCGGCAATGAAAACCTGGTTGGCCTTCTGGGCTTCCAGCATGCACCAGCCCGATTTGCACAGGTTGCAGCGGATCAACGACCACCGCTTGTATTCCAACCTGTGCTGCCAGTTCCGCCG  >  NC_002947/5773576‑5773865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.