New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816290	48 (0.820)	3 (0.050)	3/244	NT	5.7%	coding (100/624 nt)	PP_5092	NLP/P60 protein
	?	NC_002947	= 5816308	54 (0.980)					coding (118/624 nt)	PP_5092	NLP/P60 protein

GCTGTTATAAAGTTGCGCGCCAACACATAACTATTCATAAGAGCTTCATCTATGCCGCCTTTGATCAAGACATGGCTGACCCTCTGCCTATTATTGCCCCTGGCCGCCCACGCCACCAATCGTGAGCAACGTCTTCCCAATGGTTTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5816140‑5816290 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttcaccgAGGCGTTGGTCGTATAGCCGGTGAAACCATTGGGAAGACGTTGCTCACGATTGGTGGCGTGGGCGGCCAGGGGCAATAATAGGCAGAGGGTCAGCCATGTCTTGATCAAAGGCGGCATAGATGAAGCTCTTATGAATAGTTATGTG  <  NC_002947/5816308‑5816163                                                                                                                                                                                                                                                                                                           GCTGTTATAAAGTTGCGCGCCAACACATAACTATTCATAAGAGCTTCATCTATGCCGCCTTTGATCAAGACATGGCTGACCCTCTGCCTATTATTGCCCCTGGCCGCCCACGCCACCAATCGTGAGCAACGTCTTCCCAATGGTTTCAC                                                                                                                                                      <  4:275327/149‑1                                   TCATAAGAGCTTCATCTATGCCGCCTTTGATCAAGACATGGCTGACCCTCTGCCTATTATTGCCCCTGGCCGCCCACGCCACCAATCGTGAGCAACGTCTTCCCAATGGGTTCACCGAGGCGTTGGTCGTATAGCCGGTGAAACCATT                                                                                                                     <  7:66896/148‑1                                                                   AAGACATGGCTGACCCTCTGCCTATTATTGCCCCTGGCCGCCCACGCCACAAATCGTGAGCAACGTCTTCCCAATGGTTTCACCGAGGCGTTGGTCGTATAGCCGGTGAAACCATTG                                                                                                                    >  7:326599/1‑117                                                                   AAGACATGGCTGACCCTCTGCCTATTATTGCCCCTGGCCGCCCACGCCACAAATCGTGAGCAACGTCTTCCCAATGGTTTCACCGAGGCGTTGGTCGTATAGCCGGTGAAACCATTG                                                                                                                    <  8:326599/117‑1                                                                                                                                                     CCGAGGCGTTGGTCGAATACCAGGTGAAACCATTGGGAAGACGTTGCTCACGATTCGTCGCGTGGGCGGCCAGGGGCAATAATAGGCAGAGGGGCAGCCATGTCTTGATCAAAGGCGGCATAGATTAAGCTCTTATTAATAGTTATGTt  >  6:81002/1‑148                                                                                                                                                      CGAGGCGTTGGTCGTATAGCCGGTGAAACCATTGGGAAGACGTTGCTCACGATTGGTGGCGTGGGCGGCCAGGGGCAATAATAGGCAGAGGGTCAGCCATGTCTTGATCAAAGGCGGCATAGATGAAGCTCTT                 <  5:188726/133‑1                                                                                                                                                      CGAGGCGTTGGTCGTATAGCCGGTGAAACCATTGGGAAGACGTTGCTCACGATTGGTGGCGTGGGCGGCCAGGGGCAATAATAGGCAGAGGGTCAGCCATGTCTTGATCAAAGGCGGCATAGATGAAGCTCTT                 >  6:188726/1‑133                                                                                                                                                                                                                                                                                                           GCTGTTATAAAGTTGCGCGCCAACACATAACTATTCATAAGAGCTTCATCTATGCCGCCTTTGATCAAGACATGGCTGACCCTCTGCCTATTATTGCCCCTGGCCGCCCACGCCACCAATCGTGAGCAACGTCTTCCCAATGGTTTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5816140‑5816290 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtttcaccgAGGCGTTGGTCGTATAGCCGGTGAAACCATTGGGAAGACGTTGCTCACGATTGGTGGCGTGGGCGGCCAGGGGCAATAATAGGCAGAGGGTCAGCCATGTCTTGATCAAAGGCGGCATAGATGAAGCTCTTATGAATAGTTATGTG  <  NC_002947/5816308‑5816163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.