New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400298	61 (1.040)	3 (0.050)	3/254	NT	6.1%	intergenic (+33/‑117)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 400367	34 (0.600)					intergenic (+102/‑48)	PP_0333/PP_0334	hypothetical protein/transposase

GGTGGACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGAC  >  NC_002947/400151‑400444                                                                                                                                                       |                                                                                                                                                     ggtggACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGa                                                                                                                                                     >  2:78497/1‑149 (MQ=255)  gtggACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGAAGCCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGCAATCAATGGAc                                                                                                                                                    >  8:267721/1‑149 (MQ=255)     gACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCg                                                                                                                                                 >  3:195516/1‑149 (MQ=255)            gcaACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCccgc                                                                                                                                          <  4:188305/149‑1 (MQ=255)                 ttCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGa                                                                                                                                       >  2:197844/1‑147 (MQ=255)                 ttCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAAAGTAATCGATGGACTCGCCCCCGCCGa                                                                                                                                       <  1:197844/147‑1 (MQ=255)                       tACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCAAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCAtaa                                                                                                                               >  7:205310/1‑146 (MQ=255)                         cccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAg                                                                                                                            >  2:131409/1‑149 (MQ=255)                                 tggtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGt                                                                                                                           >  4:231880/1‑142 (MQ=255)                                 tggtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGt                                                                                                                           <  3:231880/142‑1 (MQ=255)                                  ggtggGTTCCAAGGCGCTGCGCGAGTTCTAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACggt                                                                                                                   >  1:205710/1‑149 (MQ=255)                                   gtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACggtg                                                                                                                  >  6:59947/1‑149 (MQ=255)                                       gTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGgtgt                                                                                                              >  4:7962/1‑149 (MQ=255)                                        ttCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGtt                                                                                                             >  3:333475/1‑149 (MQ=255)                                          ccAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTc                                                                                                            <  7:121895/148‑1 (MQ=255)                                             aGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCg                                                                                                           >  5:82193/1‑146 (MQ=255)                                               gcgcTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCgaagaa                                                                                                      <  1:136968/149‑1 (MQ=255)                                                 gcTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGc                                                                                                    >  5:235692/1‑149 (MQ=255)                                                          gTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAg                                                                                           >  2:49424/1‑149 (MQ=255)                                                           ttCATGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCgaagaa                                                                                                      <  7:231169/137‑1 (MQ=255)                                                           ttCAAGGCGGCGGTCAACCCGGCTAA‑TAAGTTCACTGCTGGCAAGCCTGTGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGCAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGc                                                                                          <  7:267721/149‑1 (MQ=25)                                                           ttCAAGGCGGCGGTCAACCCGGCGAAGGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGc                                                                                                    >  1:4519/1‑140 (MQ=255)                                                           ttCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGc                                                                                                    <  2:4519/139‑1 (MQ=255)                                                           ttCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGAAGGACTCGCCCCCGACGA‑GGCAAAACAGTGCCACGGTGGTGTTCGAAGAAGAGAACggaaca                                                                                          >  8:231169/1‑145 (MQ=37)                                                            tCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcg                                                                                          >  2:298065‑M1/1‑89 (MQ=255)                                                            tCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggc                                                                                           <  3:104386‑M1/148‑60 (MQ=255)                                                            tCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCAACGCCGA‑GGCATCACATTGCCACGGTGGTGTTCga                                                                                                          >  4:44105/1‑132 (MQ=255)                                                             cAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCg                                                                                         <  3:7962/148‑1 (MQ=255)                                                                   ggcggTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATGAGCAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGc                                                                                    >  1:294792/1‑149 (MQ=255)                                                                     cggTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagt                                                                                 <  1:298065‑M1/149‑70 (MQ=255)                                                                      ggTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCTCGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAc                                                                               <  2:340880‑M2/149‑2 (MQ=255)                                                                          aaCCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccat                                                                            <  8:284157‑M2/148‑5 (MQ=255)                                                                          aaCCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccat                                                                            >  1:78497‑M2/1‑144 (MQ=255)                                                                               ggCTAA‑TAAGTTCACTGCTGTCAATCCAGGGTGCTTCTCTGAATCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGACGA‑GGCATCACAGTGCCACGGTTGTGTTCGAAGAAGCCAACGGCAGCGATGGCGAGACCATGaaaaa                                                                      <  8:205310/149‑1 (MQ=18)                                                                               ggCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCTCGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa                                                                      <  1:340880/149‑1 (MQ=255)                                                                               ggCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaa                                                                        >  2:311622/1‑147 (MQ=255)                                                                                       aagTTCACTGCTGGCAAGCCAGGGTGCAGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTAGCCACCGACGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAATCCAAAGGCAGCTAGGGCGATAACATGAAAAATCATAG‑t                                                              >  5:4340/1‑149 (MQ=21)                                                                                         gTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAATAAGCCAACGGCAGCGAGGGCGAGACAATGAAAAAGCATAG‑TTc                                                            >  7:94660/1‑149 (MQ=255)                                                                                              ctgctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGaaa                                                        >  1:35750/1‑148 (MQ=255)                                                                                                    gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                                <  2:198890/119‑1 (MQ=255)                                                                                                    gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                                >  1:198890/1‑119 (MQ=255)                                                                                                    gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAacac                                                     >  3:15659/1‑145 (MQ=255)                                                                                                    gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAacac                                                     <  4:15659/145‑1 (MQ=255)                                                                                                    gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGAtt                                                 >  8:153303/1‑149 (MQ=255)                                                                                                    gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGAtt                                                 >  3:41769/1‑149 (MQ=255)                                                                                                        gCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCt                                             <  2:35750/149‑1 (MQ=255)                                                                                                         ccAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCATAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTg                                            <  4:195516/149‑1 (MQ=255)                                                                                                               tGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCtt                                        <  8:46829/147‑1 (MQ=255)                                                                                                               tGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCtt                                        >  7:46829/1‑147 (MQ=255)                                                                                                                 cTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCAc                                    <  4:333475/149‑1 (MQ=255)                                                                                                                  tGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACt                                   >  6:61736/1‑149 (MQ=255)                                                                                                                    aTCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTg                                  <  7:284157/148‑1 (MQ=255)                                                                                                                    aTCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGa                                 >  2:24510/1‑149 (MQ=255)                                                                                                                    aTCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCAAAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGa                                 >  1:100553/1‑149 (MQ=255)                                                                                                                       tGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgt                              >  5:190039/1‑149 (MQ=255)                                                                                                                       tGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAt                                <  4:101762/147‑1 (MQ=255)                                                                                                                       tGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAt                                >  3:101762/1‑147 (MQ=255)                                                                                                                       tGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGAGAGGGCGAGACCATGATAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgt                              >  4:249284/1‑149 (MQ=255)                                                                                                                       tGAAGCGAGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGAAAACGGAAGCCAGGCCGAGACCATGAAAAACCATAG‑TTCGAAACACGATACACTGTCTTCAAATGAtgt                              >  4:254206/1‑149 (MQ=14)                                                                                                                        gAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgtg                             >  3:274185/1‑149 (MQ=255)                                                                                                                        gAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgtg                             >  1:228703/1‑149 (MQ=255)                                                                                                                        gAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTAACACGGTGGGGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGGCCATGAAAAAGGATTG‑TTAGGAACACGATTACCGGTCTTACACTGAtttg                             >  1:100960/1‑149 (MQ=14)                                                                                                                         aaGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAt                                <  2:205710/145‑1 (MQ=255)                                                                                                                          aGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTTCGAAACACGATTCCCTGTCTTCCACTGATGTgg                            <  1:49424/149‑1 (MQ=255)                                                                                                                           gCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAg                          <  6:235692/149‑1 (MQ=255)                                                                                                                               gcgcCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                      <  4:41769/149‑1 (MQ=38)                                                                                                                               gcgcCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGGTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                      <  6:82193/149‑1 (MQ=38)                                                                                                                                          aaTGTAATCGATGGACTCGCCCCCGCCGATGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAAc               >  1:214817/1‑148 (MQ=14)                                                                                                                                          aaTGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCa             >  2:351678/1‑149 (MQ=31)                                                                                                                                           aTGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCAt            >  1:253641/1‑149 (MQ=11)                                                                                                                                                    aTGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggtt      >  1:78497‑M1/1‑4 (MQ=255)                                                                                                                                                    aTGGtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggtt      <  8:284157‑M1/148‑145 (MQ=255)                                                                                                                                                       gtctcgccctcgctgccgttggcttcttcgaacaccaccgaggcactgtgatgcctcggcgggggcgagtccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgacc  <  2:340880‑M1/149‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GGTGGACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAA‑GAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCAT‑A‑CAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGAC  >  NC_002947/400151‑400444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.