New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400298	61 (1.040)	3 (0.050)	3/254	NT	6.1%	intergenic (+33/‑117)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 400367	34 (0.600)					intergenic (+102/‑48)	PP_0333/PP_0334	hypothetical protein/transposase

GGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACA  >  NC_002947/400220‑400455                                                                                                                                                     |                                                                                          ggTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCTCGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAc                                                                                          <  2:340880‑M2/149‑2 (MQ=255)     aaCCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccat                                                                                       <  8:284157‑M2/148‑5 (MQ=255)     aaCCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccat                                                                                       >  1:78497‑M2/1‑144 (MQ=255)          ggCTAATAAGTTCACTGCTGTCAATCCAGGGTGCTTCTCTGAATCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGACGA‑GGCATCACAGTGCCACGGTTGTGTTCGAAGAAGCCAACGGCAGCGATGGCGAGACCATGaaaaa                                                                                 <  8:205310/149‑1 (MQ=18)          ggCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCTCGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaaaa                                                                                 <  1:340880/149‑1 (MQ=255)          ggCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGaaa                                                                                   >  2:311622/1‑147 (MQ=255)                 aagTTCACTGCTGGCAAGCCAGGGTGCAGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTAGCCACCGACGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAATCCAAAGGCAGCTAGGGCGATAACATGAAAAATCATAG‑t                                                                         >  5:4340/1‑149 (MQ=21)                   gTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAATAAGCCAACGGCAGCGAGGGCGAGACAATGAAAAAGCATAG‑TTc                                                                       >  7:94660/1‑149 (MQ=255)                        ctgctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGaaa                                                                   >  1:35750/1‑148 (MQ=255)                              gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                                           <  2:198890/119‑1 (MQ=255)                              gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga                                                                                           >  1:198890/1‑119 (MQ=255)                              gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAacac                                                                <  4:15659/145‑1 (MQ=255)                              gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAacac                                                                >  3:15659/1‑145 (MQ=255)                              gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGAtt                                                            >  3:41769/1‑149 (MQ=255)                              gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGAtt                                                            >  8:153303/1‑149 (MQ=255)                                  gCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCt                                                        <  2:35750/149‑1 (MQ=255)                                   ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCATAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTg                                                       <  4:195516/149‑1 (MQ=255)                                         tGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCtt                                                   >  7:46829/1‑147 (MQ=255)                                         tGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCtt                                                   <  8:46829/147‑1 (MQ=255)                                           cTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCAc                                               <  4:333475/149‑1 (MQ=255)                                            tGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACt                                              >  6:61736/1‑149 (MQ=255)                                              aTCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTg                                             <  7:284157/148‑1 (MQ=255)                                              aTCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGa                                            >  2:24510/1‑149 (MQ=255)                                              aTCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCAAAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGa                                            >  1:100553/1‑149 (MQ=255)                                                 tGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgt                                         >  5:190039/1‑149 (MQ=255)                                                 tGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAt                                           <  4:101762/147‑1 (MQ=255)                                                 tGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAt                                           >  3:101762/1‑147 (MQ=255)                                                 tGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGAGAGGGCGAGACCATGATAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgt                                         >  4:249284/1‑149 (MQ=255)                                                 tGAAGCGAGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGAAAACGGAAGCCAGGCCGAGACCATGAAAAACCATAG‑TTCGAAACACGATACACTGTCTTCAAATGAtgt                                         >  4:254206/1‑149 (MQ=14)                                                  gAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgtg                                        >  1:228703/1‑149 (MQ=255)                                                  gAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAtgtg                                        >  3:274185/1‑149 (MQ=255)                                                  gAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTAACACGGTGGGGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGGCCATGAAAAAGGATTG‑TTAGGAACACGATTACCGGTCTTACACTGAtttg                                        >  1:100960/1‑149 (MQ=14)                                                   aaGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGAt                                           <  2:205710/145‑1 (MQ=255)                                                    aGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTTCGAAACACGATTCCCTGTCTTCCACTGATGTgg                                       <  1:49424/149‑1 (MQ=255)                                                     gCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAg                                     <  6:235692/149‑1 (MQ=255)                                                         gcgcCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                                 <  4:41769/149‑1 (MQ=38)                                                         gcgcCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGGTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt                                 <  6:82193/149‑1 (MQ=38)                                                                  aaTGTAATCGATGGACTCGCCCCCGCCGATGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAAc                          >  1:214817/1‑148 (MQ=14)                                                                  aaTGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCa                        >  2:351678/1‑149 (MQ=31)                                                                   aTGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCAt                       >  1:253641/1‑149 (MQ=11)                                                                                aCTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgaccg           <  1:298065‑M2/149‑81 (MQ=255)                                                                                         cgccgA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgaccgccgccttga  >  2:298065‑M2/1‑60 (MQ=255)                                                                                          gccgA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGAccatcgattacattgtatggcgcacgcttcagatcagcaccctggcttgccagcagtgaacttcttcgccgggttgaccgccgccttga  <  3:104386‑M2/148‑90 (MQ=255)                                                                                                                                                     |                                                                                          GGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGA‑GGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAG‑TTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACA  >  NC_002947/400220‑400455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.