New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	970912 =	44 (0.750)	5 (0.090)	4/252	NT	10.6%	coding (761/1116 nt)	tgt	queuine tRNA‑ribosyltransferase
	?	NC_002947	970966 =	42 (0.740)					coding (815/1116 nt)	tgt	queuine tRNA‑ribosyltransferase

CTGGCCATTGGCGGCCTGTCGGTGGGCGAGCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATCCGACCTGTGACTGC  >  NC_002947/970773‑971057                                                                                                                                            |                                                                                                                                                     cTGGCCATTGGCGGCCTGTCGGTGGGCGAGCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑Cgcg‑‑g                                                                                                                                          >  6:96772/1‑149 (MQ=255)    gCCATTGGCGGCCTGTCGGTGGGCGAGCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑Cgcg‑‑gc                                                                                                                                         <  6:154105/147‑1 (MQ=255)                ccgTCGGTGGGCGAGCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGa                                                                                                                           <  5:323295/147‑1 (MQ=255)                     ggTGGGCGAGCCCACGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCGCGTTACCTTATGGGGGTAGGCACACCGGAAGAGCGCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGGTCGACTGCg                                                                                                                      >  4:146341/1‑149 (MQ=255)                        gggCGAGCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGa                                                                                                                   <  3:146341/149‑1 (MQ=255)                              gCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGa                                                                                                             >  2:95135/1‑149 (MQ=255)                                  aaGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGAcgcg                                                                                                         >  7:135430/1‑149 (MQ=255)                                     cACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTaa                                                                                                      <  4:228517/149‑1 (MQ=255)                                        gAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAAcgc                                                                                                   >  3:248069/1‑149 (MQ=255)                                         aaaTGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAAcgcg                                                                                                  >  8:20947/1‑149 (MQ=255)                                                  aGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGt                                                                                         >  4:31408/1‑149 (MQ=255)                                                   gtcacaggtcggatccagcggcgattcatcgtgacgatggaacgcattgcggatcttgagcacccctttatcaacgaacagatgaccgtTGCGCGCGTTACGCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACg                                                                                           >  3:319906‑M1/90‑149 (MQ=255)                                                        tGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTg                                                                                   >  7:181570/1‑149 (MQ=255)                                                              gatccagcggcgattcatcgtgacgatggaacgcattgcggatcttgatcacccctgtatcaacgaacagatgaccgtTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAAc                                                                                            <  8:75675‑M1/56‑1 (MQ=255)                                                              gatccagcggcgattcatcgtgacgatggaacgcattgcggatcttgatcacccctgtatcaacgaacagatgaccgtTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAAc                                                                                            >  7:75675‑M1/79‑134 (MQ=255)                                                              gatccagcggcgattcatcgtgacgatggaacgcattgcggatcttgatcacccctgtatcaacgaacagatgaccgtTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGtt                                                                             <  3:265586‑M1/71‑1 (MQ=255)                                                              aTCTGCCGGACCTGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCACACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGtt                                                                             >  4:82245/1‑149 (MQ=255)                                                                   ccGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGa                                                                           <  7:32663/146‑1 (MQ=255)                                                                   ccGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGAt                                                                          <  6:281252/147‑1 (MQ=255)                                                                       aCCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAggg                                                                    <  4:248069/149‑1 (MQ=255)                                                                       aCCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAggg                                                                    <  2:176592/149‑1 (MQ=255)                                                                       aCCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAggg                                                                    <  8:181570/149‑1 (MQ=255)                                                                        ccAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAgggg                                                                   <  1:95135/149‑1 (MQ=255)                                                                         cAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGt                                                                  >  1:338805/1‑149 (MQ=255)                                                                         cAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGt                                                                  <  3:31408/149‑1 (MQ=255)                                                                           gATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGa                                                                >  1:163219/1‑149 (MQ=255)                                                                            aTGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGAt                                                               <  2:363357/149‑1 (MQ=255)                                                                              atcgtgacgatggaacgcattgcggatcttgatcacccctgtatcaacgaacagatgaccgtTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATc                                                              >  4:265586‑M1/63‑148 (MQ=255)                                                                                 tgctgACAAACCTCGTTACCTTTTGGGGGTAGGAAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTAGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAg                                                           >  7:56755/1‑148 (MQ=255)                                                                                 tgctgACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATc                                                              >  6:321470/1‑145 (MQ=255)                                                                                    tgACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCAGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATcc                                                       >  2:238682/1‑149 (MQ=255)                                                                                        aaaCCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGTG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCaa                                                   >  3:170005/1‑149 (MQ=255)                                                                                        aaaCCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCaa                                                   >  4:168559/1‑149 (MQ=255)                                                                                        aaaCCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCaa                                                   >  4:273430/1‑149 (MQ=255)                                                                                         aaCCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAAt                                                  <  4:346973/149‑1 (MQ=255)                                                                                               gTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGtt                                             <  1:238682/148‑1 (MQ=255)                                                                                               gTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGtt                                             <  5:96772/148‑1 (MQ=255)                                                                                                ttACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTcc                                           <  6:330083/149‑1 (MQ=255)                                                                                                       aTGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGt                                      <  7:20947/147‑1 (MQ=255)                                                                                                        tGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCAc                                   <  2:163219/149‑1 (MQ=255)                                                                                                          gtggTATGCAAACGGGAAGATGTCGTTGAGGGTGTGCGC‑CGCG‑‑GGGTCGTCATGTTCGACTGCGTGATGCCGACGCGTAACGCTGGCAACGGTCATCTGTTCGTTGATTCAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACg                                  <  3:79351/146‑1 (MQ=255)                                                                                                                ggCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGTG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAAt                            <  4:170005/148‑1 (MQ=255)                                                                                                                ggCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAAt                            <  8:135430/148‑1 (MQ=255)                                                                                                                     aCCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATcgccgc                      <  8:56755/149‑1 (MQ=255)                                                                                                                            gATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGAGTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATcc               <  5:321470/149‑1 (MQ=255)                                                                                                                            gATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATcc               >  1:343707/1‑149 (MQ=255)                                                                                                                            gATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATcc               >  1:338326/1‑149 (MQ=255)                                                                                                                                   ttGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATCCGACCtgt        <  2:343707/149‑1 (MQ=255)                                                                                                                                   ttGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATCCGACCtgt        <  2:338326/149‑1 (MQ=255)                                                                                                                                       gggTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATCCGACCTGTGAc     <  3:263157/148‑1 (MQ=255)                                                                                                                                       gggTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATCCGACCTGTGAc     >  4:263157/1‑148 (MQ=255)                                                                                                                                         gtgtGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAAGGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCAGGATGAATCGCCGCTGGATCCGACCTGTGACTGc  >  3:252812/1‑149 (MQ=255)                                                                                                                                            TGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTc                                            <  6:293779‑M1/104‑1 (MQ=255)                                                                                                                                            TGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTc                                            >  5:293779‑M1/1‑104 (MQ=255)                                                                                                                                            |                                                                                                                                                     CTGGCCATTGGCGGCCTGTCGGTGGGCGAGCCCAAGCACGAAATGATCAAGGTGCTGGATTATCTGCCGGACCAGATGCCTGCTGACAAACCTCGTTACCTTATGGGGGTAGGCAAACCGGAAGATCTCGTTGAGGGTGTGCGC‑CGCG‑‑GCGTCGACATGTTCGACTGCGTGATGCCGACGCGTAACGCGCGCAACGGTCATCTGTTCGTTGATACAGGGGTGATCAAGATCCGCAATGCGTTCCATCGTCACGATGAATCGCCGCTGGATCCGACCTGTGACTGC  >  NC_002947/970773‑971057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.