New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1054325 =	47 (0.800)	3 (0.050)	3/246	NT	6.6%	coding (139/588 nt)	PP_0912	hypothetical protein
	?	NC_002947	1054389 =	41 (0.740)					coding (75/588 nt)	PP_0912	hypothetical protein

AGCATCGTATTCGTATACGACGATGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCGGCACAAGGCCGGG  >  NC_002947/1054179‑1054472                                                                                                                                                   |                                                                                                                                                    acctgaacccggacactgcggatcacgagttctgatcctgctgtagcgcttcaccgcaaacgcccggccttgtgccgggcgttttcgtttgctgccgggtaaaacgcttcccgctgcctggcgtgcacgcagatgctcatcctgtaGGc                                                                                                                                                   <  3:147114‑M1/3‑1 (MQ=255)     tcgtattcgtatACGACGATGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTc                                                                                                                                               >  3:32270/1‑149 (MQ=255)     tcgtattcgtatACGACGATGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTGGAATCCGGTGATGAGGGCTTCCCCATTCATGCGCTGGACGATTCGGCCTTc                                                                                                                                               <  1:28699/149‑1 (MQ=255)        tattcgtatACGACGATGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGcc                                                                                                                                            >  7:92393/1‑149 (MQ=255)         ccggacactgcggatcacgagttctgatcctgctgtagcgcttcaccgcaaacgcccggccttgtgccgggcgttttagtttgctgccgggtaaaacgcttaccgctgcctggcgtgcacgcagatgctcctactgtaggccttagat                                                                                                                                            <  6:62172‑M1/10‑5 (MQ=255)               ataCGACGATGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGTTCTTCCACATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACa                                                                                                                                     >  4:298347/1‑149 (MQ=255)                  cgacgaTGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTGATGCGCTGGACGATTCGGCCTTCGCCCCAGACATc                                                                                                                                   <  7:19815/148‑1 (MQ=255)                   gacgaTGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCa                                                                                                                                  >  5:63870/1‑148 (MQ=255)                      gaTGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCaa                                                                                                                                 <  8:194666/146‑1 (MQ=255)                      gaTGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCaa                                                                                                                                 >  7:194666/1‑146 (MQ=255)                           ggTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTgc                                                                                                                         <  7:204561/149‑1 (MQ=255)                             ttGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTgcag                                                                                                                       >  6:232986/1‑149 (MQ=255)                             ttGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTgcag                                                                                                                       <  4:32270/149‑1 (MQ=255)                                ggAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTgcagca                                                                                                                     <  2:73527/148‑1 (MQ=255)                                ggAATGTGCCCGCCAGCGAACGGCCCGTGGGAGATGCGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGAGGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCAc                                                                                                                    >  3:117998/1‑149 (MQ=255)                                 gAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACt                                                                                                                   >  2:177385/1‑149 (MQ=255)                                 gAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACt                                                                                                                   <  1:226232/149‑1 (MQ=255)                                  aaTGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACtg                                                                                                                  >  5:276925/1‑149 (MQ=255)                                   aTGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACtgt                                                                                                                 <  7:168623/149‑1 (MQ=255)                                      tgCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGcc                                                                                                              >  4:107228/1‑149 (MQ=255)                                          cGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGcctcct                                                                                                          <  6:63870/149‑1 (MQ=255)                                             cAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGtt                                                                                                       <  3:107228/149‑1 (MQ=255)                                             cAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGtt                                                                                                       <  1:206004/149‑1 (MQ=255)                                              aGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGt                                                                                                        >  7:324568/1‑147 (MQ=255)                                               gCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAg                                                                                                     <  1:177385/149‑1 (MQ=255)                                                 gAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGt                                                                                                   <  7:280935/149‑1 (MQ=255)                                                       cccGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATc                                                                                             >  6:26037/1‑149 (MQ=255)                                                             cgcccggccttgtgccgggcgttttcgtttgctggcgggtaaaacgcttcccgctgcctggcgtgcacgcagatgctcatcctgtaGGCCTTCGCGCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGc                                                                                       >  8:141990‑M1/87‑149 (MQ=255)                                                                  tGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACa                                                                                  <  8:92393/149‑1 (MQ=255)                                                                           cAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCa                                                                         >  7:69026/1‑149 (MQ=255)                                                                           cAGCCTTGTTCAGGTTGTACGCATAGTTAAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTAGCCCCAGACATCAAGAATATGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCa                                                                         >  1:23264/1‑149 (MQ=255)                                                                            aGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAg                                                                                                     <  2:35238/120‑1 (MQ=255)                                                                            aGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAg                                                                                                     >  1:35238/1‑120 (MQ=255)                                                                                  gTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGt                                                                  >  4:112612/1‑149 (MQ=255)                                                                                     cAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCa                                                               >  6:123563/1‑149 (MQ=255)                                                                                        gTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGc                                                            <  8:324568/149‑1 (MQ=255)                                                                                             tgccgggtaaaacgcttcccgctgcctggcgtgcacgcagatgctcatcctgtaGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACa                                                                                  <  5:91721‑M1/68‑1 (MQ=255)                                                                                             tgccgggtaaaacgcttcccgctgcctggcgtgcacgcagatgctcatcctgtaGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACa                                                                                  >  6:91721‑M1/55‑122 (MQ=255)                                                                                                    gTTGAATGCGGGCAAGAGGTCTTCCCCATTCATGGGCGGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTTCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGa                                                <  8:83732/149‑1 (MQ=255)                                                                                                          tcaggTGATGAGGTCTTACCCATTCATGCGATGGACGATTCGGCCTTCTCCCCAGACATCAAGAATCTGCATCACTGTGCCTCATGTTAGGTTTGATCGAAGGCCTACAGTATGATCATCTGCGTGCACGCAAGGCAGCGGGAAGCGtt                                          >  1:332633/4‑149 (MQ=255)                                                                                                           ccGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGttt                                         >  4:96561/1‑149 (MQ=255)                                                                                                            cGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGttt                                         <  5:123563/148‑1 (MQ=255)                                                                                                              gTGATGAGGGCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTAc                                      <  6:276925/149‑1 (MQ=255)                                                                                                                       tCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTa                                                                                    >  5:4935/1‑94 (MQ=255)                                                                                                                       tCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTa                                                                                    <  6:4935/94‑1 (MQ=255)                                                                                                                         ttCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCaaa                           >  8:80843/1‑149 (MQ=255)                                                                                                                           ccccATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAAc                          >  6:276983/1‑148 (MQ=255)                                                                                                                               aTTCATGCGCTGGACTATTCGGCATTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTTATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGaaaa                     <  3:298347/149‑1 (MQ=255)                                                                                                                                      cgcTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCg               <  7:80843/148‑1 (MQ=255)                                                                                                                                          ggACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCGGcac           >  1:170629/1‑148 (MQ=255)                                                                                                                                           gACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCGGCACaa         <  5:26037/149‑1 (MQ=255)                                                                                                                                            aCGATTCGGCCTTCGCCCCAGACATCAAGAATCTTCAGCACTGTGCCTCCTGTTATGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAATCGTTTTACCCGTCAGCAAACGAAAACGCCCGGCACaa         <  2:23264/148‑1 (MQ=255)                                                                                                                                                ttCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCGGCACAAGGCCg    <  3:112612/149‑1 (MQ=255)                                                                                                                                                  cGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCGGCACAAGGCCggg  >  1:174325/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGCATCGTATTCGTATACGACGATGAGGTTGGGAATGTGCCCGCCAGCGAACGGCCCGTTGGAGATGAGCTGGCCAGCCTTGTTCAGGTTGTACGCATCGTTGAATCCGGTGATGAGGTCTTCCCCATTCATGCGCTGGACGATTCGGCCTTCGCCCCAGACATCAAGAATCTGCAGCACTGTGCCTCCTGTTAGGTTTGATCGAAGGCCTACAGGATGAGCATCTGCGTGCACGCCAGGCAGCGGGAAGCGTTTTACCCGGCAGCAAACGAAAACGCCCGGCACAAGGCCGGG  >  NC_002947/1054179‑1054472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.