New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156415 =	39 (0.660)	3 (0.050)	3/248	NT	6.9%	intergenic (+118/‑98)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156456 =	44 (0.790)					intergenic (+159/‑57)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase

TGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCAC  >  NC_002947/1156272‑1156563                                                                                                                                                |                                                                                                                                                     agcaggcgctgtgcttcagccaggcgccaggcggtgtgggccggggcattgagccaactgttcacatacaggttgaggggggtcatgggccagcttgatccttgccagtcgtttgcgaattctagccagcggggtcatggcggATGTCa                                                                                                                                                 <  2:257978‑M1/6‑1 (MQ=255)            cgGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCTCCCGCGAAGAGGCCCGCACAGGCCCCCAAAATGTCACTGCCCGGTGa                                                                                                                                      >  1:47464/1‑149 (MQ=255)                      aTTGCGTTTTGGGGGTGCCTGTGCGGGCTTCTTCGCGGGTCAACCCGCTCCTACACCGACCGAGTCCGGTTTGCGCCGAAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtc                                                                                                                            <  2:47464/149‑1 (MQ=38)                        tGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTTCAACGACCGAGTCAGGTTTGCGTGGTTGGAGCGGGTTGGCCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTGACTGGCCGGTGACAATCCcgtcgt                                                                                                                          >  5:186670/1‑149 (MQ=38)                                cggtgtgggccggggcattgagccaactgttcacatacaggttgaggggggtcatgggccagcttgatccttgccagtcgtttgcgaattctagccagcggggtcatggcggATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTg                                                                                                                  >  8:194726‑M1/113‑149 (MQ=255)                                 ggggggCCTGTGCGGGCTGCTTCGGGGGTCAACCCGCTCCTACACCCACCCAGTCCGGTTGGCGTCGTAGGCGGGGGTGCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTg                                                                                                                  <  1:223446/148‑1 (MQ=255)                                       ggccggggcattgagccaactgttcacatacaggttgaggggggtcatgggccagcttgatccttgccagtcgtttgcgaattctagccagcggggtcatggcggATGTCACTGCCCGGTGACAATCCCGTCGTTCTTCGTGACATcc                                                                                                            >  8:187841‑M1/106‑148 (MQ=255)                                       ggccggggcattgagccaactgttcacatacaggttgaggggggtcatgggccagcttgatccttgccagtcgtttgcgaattctagccagcggggtcatggcggATGTCACTGCCCGGTGACAATCCCGTCGTTCTTCGTGACATcc                                                                                                            <  7:187841‑M1/43‑1 (MQ=255)                                           tgCGGGCTTCTTCGCGGGGGAACCCGCTCCTCCAACTCCCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCa                                                                                                        <  6:186670/148‑1 (MQ=255)                                           ggCGGGCTTCTGCGGGGGTCAACCCGCCCCAACACCCCCCCAGGCCGGTTTGCGGCTTCGTCGGGGTTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGcc                                                                                                         <  1:131767/146‑1 (MQ=255)                                                gCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGAccc                                                                                                  >  4:286283/1‑149 (MQ=255)                                                     ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTg                                                                                             >  6:363601/1‑149 (MQ=255)                                                       cgcgGGTGAACCCGCTCCTACAACTACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTgg                                                                                            <  3:286283/148‑1 (MQ=255)                                                       cgcgGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGc                                                                                           >  1:275308/1‑149 (MQ=255)                                                            gtcaaCCCGCTCCACCAACCACCGAGGCAGGTTTCCGTCGTAGTCGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                                      <  1:109861/146‑1 (MQ=38)                                                            gTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                                      <  5:79088/149‑1 (MQ=255)                                                                    gCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaaa                                                                              >  4:284825/1‑149 (MQ=255)                                                                         tACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCCTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGCATTCGCAAACGACt                                                                         >  2:115526/1‑149 (MQ=255)                                                                           cAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTg                                                                        <  3:284825/148‑1 (MQ=255)                                                                            aaCGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGATGAGGCCCGCACAGGCACCCAAAATGTCAATGCCCCGTGACATGCCCGTCGTCCGTCGGGACATCCGACATGACCCGGAT‑GCGAGAAATCGCAAGCGAcctgc                                                                      >  6:309795/1‑144 (MQ=25)                                                                               gACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGc                                                                      >  8:116359/1‑146 (MQ=255)                                                                               gACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGc                                                                      <  7:116359/146‑1 (MQ=255)                                                                               gACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAg                                                                   >  8:332806/1‑149 (MQ=255)                                                                                    aGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATc                                                               >  3:292852/1‑148 (MQ=255)                                                                                          gTTTGCGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTgg                                                        <  2:86916/149‑1 (MQ=255)                                                                                               cgtcgtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCTGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCAt                                                   <  6:373393/149‑1 (MQ=255)                                                                                                gtcgtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATg                                                  >  2:86826/1‑149 (MQ=255)                                                                                                   gtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTg                                                                        <  7:169124/124‑1 (MQ=255)                                                                                                   gtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTg                                                                        >  8:169124/1‑124 (MQ=255)                                                                                                    tAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAccc                                              >  2:343665/1‑149 (MQ=255)                                                                                                      ggAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGACCATGAccccc                                            >  4:6414/1‑149 (MQ=255)                                                                                                       gAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAcccccc                                           >  4:143226/1‑149 (MQ=255)                                                                                                       caGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATCTAACTGCCCGGTGACAATCCCGTCGTCATTCGTGAAATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGCCTGGAAAGGATCAAGATGGCCCATGaccacc                                            >  4:47579/2‑148 (MQ=255)                                                                                                            ggTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAAc                                      <  2:275308/149‑1 (MQ=255)                                                                                                                  cccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAt                                <  3:360862/149‑1 (MQ=255)                                                                                                                   ccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCCACCTGTAtg                               >  3:41677/1‑149 (MQ=255)                                                                                                                        aaGAGGCCCGCACCGGCACCCAAAATGTCACTGCCCGGTGACCAGCCCGGCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGCCTGGCAAGGATCACGCTGGCCCATGACCCCCCTCAACCTGTCTGTGAAc                          <  2:348341/149‑1 (MQ=255)                                                                                                                          gagGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAg                        >  2:269188/1‑149 (MQ=255)                                                                                                                            ggCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGt                       <  7:332806/148‑1 (MQ=255)                                                                                                                             gCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgtg                             >  2:122051/1‑141 (MQ=255)                                                                                                                             gCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgtg                             <  1:122051/141‑1 (MQ=255)                                                                                                                             gCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTg                     >  1:257978/1‑149 (MQ=255)                                                                                                                               ccGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGc                   <  5:363601/149‑1 (MQ=255)                                                                                                                                                ATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCcac  >  4:292852‑M1/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     TGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCAC  >  NC_002947/1156272‑1156563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.