New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156415 =	39 (0.660)	3 (0.050)	3/248	NT	6.9%	intergenic (+118/‑98)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156456 =	44 (0.790)					intergenic (+159/‑57)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase

CCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAGCGCCTGCT  >  NC_002947/1156310‑1156598                                                                                                                                                   |                                                                                                                                               ggccggggcattgagccaactgttcacatacaggttgaggggggtcatgggccagcttgatccttgccagtcgtttgcgaattctagccagcggggtcatggcggATGTCACTGCCCGGTGACAATCCCGTCGTTCTTCGTGACATcc                                                                                                                                               >  8:187841‑M1/106‑148 (MQ=255) ggccggggcattgagccaactgttcacatacaggttgaggggggtcatgggccagcttgatccttgccagtcgtttgcgaattctagccagcggggtcatggcggATGTCACTGCCCGGTGACAATCCCGTCGTTCTTCGTGACATcc                                                                                                                                               <  7:187841‑M1/43‑1 (MQ=255)     tgCGGGCTTCTTCGCGGGGGAACCCGCTCCTCCAACTCCCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCa                                                                                                                                           <  6:186670/148‑1 (MQ=255)     ggCGGGCTTCTGCGGGGGTCAACCCGCCCCAACACCCCCCCAGGCCGGTTTGCGGCTTCGTCGGGGTTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGcc                                                                                                                                            <  1:131767/146‑1 (MQ=255)          gCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGAccc                                                                                                                                     >  4:286283/1‑149 (MQ=255)               ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTg                                                                                                                                >  6:363601/1‑149 (MQ=255)                 cgcgGGTGAACCCGCTCCTACAACTACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTgg                                                                                                                               <  3:286283/148‑1 (MQ=255)                 cgcgGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGc                                                                                                                              >  1:275308/1‑149 (MQ=255)                      gtcaaCCCGCTCCACCAACCACCGAGGCAGGTTTCCGTCGTAGTCGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                                                                         <  1:109861/146‑1 (MQ=38)                      gTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGaa                                                                                                                         <  5:79088/149‑1 (MQ=255)                              gCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCaaa                                                                                                                 >  4:284825/1‑149 (MQ=255)                                   tACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCCTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGCATTCGCAAACGACt                                                                                                            >  2:115526/1‑149 (MQ=255)                                     cAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTg                                                                                                           <  3:284825/148‑1 (MQ=255)                                      aaCGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGATGAGGCCCGCACAGGCACCCAAAATGTCAATGCCCCGTGACATGCCCGTCGTCCGTCGGGACATCCGACATGACCCGGAT‑GCGAGAAATCGCAAGCGAcctgc                                                                                                         >  6:309795/1‑144 (MQ=25)                                         gACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGc                                                                                                         <  7:116359/146‑1 (MQ=255)                                         gACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGc                                                                                                         >  8:116359/1‑146 (MQ=255)                                         gACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAg                                                                                                      >  8:332806/1‑149 (MQ=255)                                              aGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATc                                                                                                  >  3:292852/1‑148 (MQ=255)                                                    gTTTGCGGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTgg                                                                                           <  2:86916/149‑1 (MQ=255)                                                         cgtcgtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCTGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCAt                                                                                      <  6:373393/149‑1 (MQ=255)                                                          gtcgtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATg                                                                                     >  2:86826/1‑149 (MQ=255)                                                             gtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTg                                                                                                           >  8:169124/1‑124 (MQ=255)                                                             gtAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTg                                                                                                           <  7:169124/124‑1 (MQ=255)                                                              tAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAccc                                                                                 >  2:343665/1‑149 (MQ=255)                                                                ggAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGACCATGAccccc                                                                               >  4:6414/1‑149 (MQ=255)                                                                 gAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGAcccccc                                                                              >  4:143226/1‑149 (MQ=255)                                                                 caGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATCTAACTGCCCGGTGACAATCCCGTCGTCATTCGTGAAATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGCCTGGAAAGGATCAAGATGGCCCATGaccacc                                                                               >  4:47579/2‑148 (MQ=255)                                                                      ggTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAAc                                                                         <  2:275308/149‑1 (MQ=255)                                                                            cccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAt                                                                   <  3:360862/149‑1 (MQ=255)                                                                             ccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCCACCTGTAtg                                                                  >  3:41677/1‑149 (MQ=255)                                                                                  aaGAGGCCCGCACCGGCACCCAAAATGTCACTGCCCGGTGACCAGCCCGGCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGCCTGGCAAGGATCACGCTGGCCCATGACCCCCCTCAACCTGTCTGTGAAc                                                             <  2:348341/149‑1 (MQ=255)                                                                                    gagGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAg                                                           >  2:269188/1‑149 (MQ=255)                                                                                      ggCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGt                                                          <  7:332806/148‑1 (MQ=255)                                                                                       gCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgtg                                                                <  1:122051/141‑1 (MQ=255)                                                                                       gCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgtg                                                                >  2:122051/1‑141 (MQ=255)                                                                                       gCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTg                                                        >  1:257978/1‑149 (MQ=255)                                                                                         ccGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGc                                                      <  5:363601/149‑1 (MQ=255)                                                                                                        ggatgtcacgaagaacgacgggattgtcaccgggcagtgacatCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGcc                                        >  8:187841‑M2/44‑148 (MQ=255)                                                                                                        ggatgtcacgaagaacgacgggattgtcaccgggcagtgacatCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGcc                                        <  7:187841‑M2/105‑1 (MQ=255)                                                                                                          ATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCcac                                     >  4:292852‑M1/1‑149 (MQ=255)                                                                                                              cacgaaggacgacgggattgtcaccgggcagtgacatCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACcg                                 >  8:194726‑M2/38‑149 (MQ=255)                                                                                                               ACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGc                                <  6:82703‑M1/149‑1 (MQ=255)                                                                                                                 tGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACcgcct                              >  2:86479/1‑149 (MQ=255)                                                                                                                      ggTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACcgcctggcgc                         >  2:64584/1‑149 (MQ=255)                                                                                                                          aCAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACcgcctggcgcctgg                     <  3:6414/149‑1 (MQ=255)                                                                                                                          aCAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACcgcctggcgcctgg                     <  3:47579/149‑1 (MQ=255)                                                                                                                            aaTCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCt                   >  6:36321/1‑149 (MQ=255)                                                                                                                            aaTCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCt                   >  3:760/1‑149 (MQ=255)                                                                                                                             aTCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCt                   >  4:170367/1‑148 (MQ=255)                                                                                                                                     gtcCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAg          <  5:356501/149‑1 (MQ=255)                                                                                                                                      tcCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCCCACCGCCTGGCGCCTGGCTGAAGCACAgc         >  5:211033/1‑149 (MQ=255)                                                                                                                                      tcCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAgc         >  6:321175/1‑149 (MQ=255)                                                                                                                                        cTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCTGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAgcgc       <  1:64584/149‑1 (MQ=255)                                                                                                                                           cGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAGCGCctg    >  6:238052/1‑149 (MQ=255)                                                                                                                                             tgacatCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAGCGCctgct  <  2:257978‑M2/143‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               CCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCCCACACCGCCTGGCGCCTGGCTGAAGCACAGCGCCTGCT  >  NC_002947/1156310‑1156598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.