New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1775341	44 (0.750)	4 (0.070)	4/244	NT	9.3%	coding (521/1077 nt)	PP_1582	hypothetical protein
	?	NC_002947	= 1775416	37 (0.670)					coding (596/1077 nt)	PP_1582	hypothetical protein

GCACCGGCCCAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGC  >  NC_002947/1775194‑1775488                                                                                                                                                    |                                                                                                                                                    gCACCGGCCCAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCAt                                                                                                                                                    <  6:52969/149‑1 (MQ=255) gCACCGGCCCAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCAt                                                                                                                                                    >  2:344218/1‑149 (MQ=255)    ccGGCCCAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGa                                                                                                                                                 <  2:275650/149‑1 (MQ=255)     cGGCCCAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAg                                                                                                                                                <  8:39064/149‑1 (MQ=255)          cAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTgcg                                                                                                                                           >  6:8322/1‑149 (MQ=255)               cTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGac                                                                                                                                      >  8:219887/1‑149 (MQ=255)                ttGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGac                                                                                                                                      >  4:335294/1‑148 (MQ=255)                  ggCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGacc                                                                                                                                     <  3:335294/147‑1 (MQ=255)                         cGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTAttt                                                                                                                             >  4:163291/1‑148 (MQ=255)                           cccGGTTACCACGGCGCGATCGTTTCCAGCGGGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAg                                                                                                                          <  4:98262/149‑1 (MQ=255)                            ccGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAgt                                                                                                                         <  5:98074/149‑1 (MQ=255)                            ccGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAgt                                                                                                                         <  2:279608/149‑1 (MQ=255)                                ttACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAgtggtg                                                                                                                     >  3:367491/1‑149 (MQ=255)                                    cACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCg                                                                                                                  >  1:227422/1‑148 (MQ=255)                                      cGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAag                                                                                                               <  5:177316/149‑1 (MQ=255)                                       ggCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAaga                                                                                                              <  7:174237/149‑1 (MQ=255)                                          gcgATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCt                                                                                                           >  7:45944/1‑149 (MQ=255)                                          gcgATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCt                                                                                                           <  2:235475/149‑1 (MQ=255)                                            gATCGTTTGCAGAGTGACGGTCAAGGTAATTCTGGTACCTGGCACCAGTCCGTACATCGTCATCTACGATGTTGTGAAGAATACCTTCACCCAAGGGCCTGGGCATGGAGGTGGGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGc                                                                                                         <  7:293626/149‑1 (MQ=255)                                                 tttCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGAt                                                                                                    <  7:219887/149‑1 (MQ=255)                                                         gTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGAt                                                                                            <  7:24535/149‑1 (MQ=255)                                                            aCGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGAtttt                                                                                         <  4:30623/149‑1 (MQ=255)                                                             cGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTttg                                                                                        <  2:227422/149‑1 (MQ=255)                                                             cGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTttg                                                                                        <  8:45944/149‑1 (MQ=255)                                                              gggCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTttgt                                                                                       <  1:344218/149‑1 (MQ=255)                                                               ggCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTttgtt                                                                                      <  3:163291/149‑1 (MQ=255)                                                               ggCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTttgtt                                                                                      <  8:349467/149‑1 (MQ=255)                                                                 cAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGa                                                                                    >  6:73657/1‑149 (MQ=255)                                                                    ggTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCAccgtaggggatcaacaaaatccggccatctggcagctcttcggcaccactgaaataggtggtcgccg                                                                                  >  3:44255‑M1/1‑81 (MQ=255)                                                                            tGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCAccgtaggggaggaacaaaatccggcgatctggccgctcttcggcaccactgaaataggtggtctccgcccctccag                                                                         >  8:240362‑M1/1‑73 (MQ=255)                                                                             ggTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGtg                                                                        <  8:191396‑M2/149‑3 (MQ=255)                                                                                  cTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGTTGCCGAAGAGCTGCCAGATGGCCTGATTTTGTTGATCCCCTACGGtgcgcag                                                                   <  6:43014‑M2/149‑8 (MQ=255)                                                                                     gCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCAccgtaggggatcaacaaaatccggccatctggcagctcttcggcaccactgaaataggtggtcgccgcacctccatgcgcagg                                                                  <  4:44255‑M1/147‑84 (MQ=255)                                                                                     gCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGAGCATGGAGGTCCGGCGACCACCTATTTCAGTGGTGCCGAAGAGATGCCAGATGGCCGGATTTTTTTGATCCCCTACGGTGCGCAGGCa                                                                >  5:173883/1‑149 (MQ=255)                                                                                              cGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGCCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCAt                                                        >  8:332314/1‑148 (MQ=255)                                                                                                tACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCAccgtaggggatcaacaaaatccggccatctggaagctcttcggcaccactgaaataggtggtcgccgcacctccatgcgcaggcccttgggtgaag                                                     <  7:240362‑M1/149‑97 (MQ=255)                                                                                                tACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTa                                                     >  8:128758/1‑149 (MQ=255)                                                                                                   aTCGTCATCTACGATGTGGTTAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGa                                                  <  6:173883/149‑1 (MQ=255)                                                                                                    tCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGAc                                                 <  4:367491/149‑1 (MQ=255)                                                                                                      ggCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGAccc                                               >  6:61036/1‑149 (MQ=255)                                                                                                             aCGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAg                                                                                                      <  3:271653/87‑1 (MQ=255)                                                                                                             aCGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAg                                                                                                      >  4:271653/1‑87 (MQ=255)                                                                                                             aCGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGa                                                  >  8:113058/1‑139 (MQ=255)                                                                                                             aCGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGa                                                  <  7:113058/139‑1 (MQ=255)                                                                                                              cGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATc                                           <  4:293423/145‑1 (MQ=255)                                                                                                               gATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCaa                                      <  5:43014/149‑1 (MQ=255)                                                                                                                   tggtgAAGAATAGCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAacac                                   <  3:142074/148‑1 (MQ=255)                                                                                                                     gtgAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCt                                 <  5:73657/148‑1 (MQ=255)                                                                                                                      tgAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTg                                >  5:51736/1‑148 (MQ=255)                                                                                                                               ccTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTg                      <  5:8322/149‑1 (MQ=255)                                                                                                                                cTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTTCCAGATGGCCGGATTTTGTTGATCCCCTACGGtgcgcaggcccttgggtgaaggtattcttcaccacatcgtagatgccgatgta                     <  7:240362‑M2/149‑54 (MQ=255)                                                                                                                                cTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGGCCCGATCGCCAACACCTGTACCAAAGTgg                     >  5:330223/1‑149 (MQ=255)                                                                                                                                       cAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCgg              >  1:357908/1‑149 (MQ=255)                                                                                                                                         aGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCTGTGTTGCCGAAGAGCTTCCAGATGGCCGGATTTTGTTGCTCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCATCACCTGTACCATAGTGGTCACCGTGa            <  2:365138/149‑1 (MQ=255)                                                                                                                                            gCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTa         >  3:163925/1‑149 (MQ=255)                                                                                                                                             ccTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGtgcgcaggcccttgggtgaaggtattcttcaccacatcgtagatgccgatgtacggactggtgc          <  4:44255‑M2/147‑65 (MQ=255)                                                                                                                                              cTGCGCAccgtaggggatcaacaaaatcaggccatctggcagctcttcggcaacactgaaataggtggtcgccgcacctccatgcgcaggcccttgggtgaaggtattcttcaccacatcgtagatgccgatgtacggactggtgccag       <  6:43014‑M1/149‑143 (MQ=255)                                                                                                                                                 cgcATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTc     <  4:163925/148‑1 (MQ=255)                                                                                                                                                   cAccgtaggggatcaacaaaatccggccatctggcagctcttcggcaccactgaaataggtggtcgccgcacctccatgcgcaggcccttgggtgaaggtattcttcaccacatcgtagatgccgatgtacggactggtgccaggtacc  <  8:191396‑M1/149‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCACCGGCCCAGATCTTGGCTCATCGCCCGGTTACCACGGCGCGATCGTTTCCAGCGTGACGGGCAAGGTCATTCTGGTACCTGGCACCAGTCCGTACATCGGCATCTACGATGTGGTGAAGAATACCTTCACCCAAGGGCCTGCGCATGGAGGTGCGGCGACCACCTATTTCAGTGGTGCCGAAGAGCTGCCAGATGGCCGGATTTTGTTGATCCCCTACGGTGCGCAGGCATTCGTCATCTACGACCCGATCGCCAACACCTGTACCAAAGTGGTCACCGGGATTACCTCGGC  >  NC_002947/1775194‑1775488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.