New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2534228 =	47 (0.800)	3 (0.050)	3/248	NT	7.5%	coding (1555/1680 nt)	mrpD	K(+)/H(+) antiporter subunit D
	?	NC_002947	2534266 =	30 (0.540)					coding (1517/1680 nt)	mrpD	K(+)/H(+) antiporter subunit D

CAGTGGAGCGGGGAACAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGC  >  NC_002947/2534080‑2534372                                                                                                                                                     |                                                                                                                                                 ccggctggggcctggtggcgttgctgatcctgtccggcttggcctcgctgatcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctg                                                                                                                                                  <  4:125596‑M1/1‑1 (MQ=255) cAGTGGAGCGGGGAACAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACgg                                                                                                                                                  <  4:266650/149‑1 (MQ=255)   gTGGAGCGGGGAACAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCt                                                                                                                                                >  4:216386/1‑149 (MQ=255)      tggggcctggtggcgttgctgatcctgtccggcttggcctcgctgatagccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCgg                                                                                                                                             <  6:117870‑M1/6‑1 (MQ=255)       aGCGGGTAACAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGCGGTGGGGTCAGGAATCGGCGGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGc                                                                                                                                            <  5:311647/149‑1 (MQ=255)           gggAACAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTg                                                                                                                                        <  2:343330/149‑1 (MQ=255)              aaCAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAg                                                                                                                                     <  4:97502/149‑1 (MQ=255)                     ggTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAgg                                                                                                                               <  3:216386/148‑1 (MQ=255)                     ggTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGa                                                                                                                              >  6:218476/1‑149 (MQ=255)                       ttCATGGCTGCACCTGTACGTCGCGCCAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGCGAGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGAt                                                                                                                             >  5:247212/1‑148 (MQ=255)                          aTGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAgg                                                                                                                         <  5:227198/149‑1 (MQ=255)                          aTGGCTGCACCTGTACGGCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATCTAGGCATCTGGAGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAATCTGAGGATGAg                                                                                                                          <  6:39181/148‑1 (MQ=255)                           atcctgtccggcttggcctcgctgatcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCGGc                                                                                                                                            >  8:337004‑M1/123‑129 (MQ=255)                           atcctgtccggcttggcctcgctgatcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCGGc                                                                                                                                            <  7:337004‑M1/7‑1 (MQ=255)                            ggCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGca                                                                                                                       >  3:125596/1‑149 (MQ=255)                             gCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGcac                                                                                                                      <  6:288722/149‑1 (MQ=255)                               tGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGa                                                                                                                                 <  7:335413/136‑1 (MQ=255)                               tGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGa                                                                                                                                 >  8:335413/1‑136 (MQ=255)                                  aCCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGcc                                                                                                                 <  5:218476/149‑1 (MQ=255)                                         ggcctcgctgatcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCa                                                                                                            >  5:60159‑M1/109‑147 (MQ=255)                                          gTCGCTCGAGGTGGGGCCAGGAATCGGCTGGTCGGCCATGACGGCTTTGATATAGGCATCTGGGGCCTGGAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACTAGCCGAGCAGGa                                                                                                         <  6:247212/149‑1 (MQ=255)                                          gTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGa                                                                                                         <  4:320550/149‑1 (MQ=255)                                          gTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGa                                                                                                         >  4:78477/1‑149 (MQ=255)                                           tCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGAt                                                                                                        >  6:379442/1‑149 (MQ=255)                                            cgcgcgAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGAt                                                                                                        >  7:230232/1‑148 (MQ=255)                                             gcgcgAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGa                                                                                                      <  2:136949/149‑1 (MQ=255)                                                 gAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGAt                                                                                                  <  6:274288/149‑1 (MQ=255)                                                 gAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGAt                                                                                                  <  2:130931/149‑1 (MQ=255)                                                    tcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAg                                                                                                              >  1:346137‑M1/98‑134 (MQ=255)                                                    tcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAg                                                                                                              <  2:346137‑M1/37‑1 (MQ=255)                                                       gggACAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGggcag                                                                                            >  3:261238/1‑149 (MQ=255)                                                              gAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAATGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCa                                                                                     >  3:80949/1‑149 (MQ=255)                                                                    gCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGAc                                                                                                     >  8:201836/1‑127 (MQ=255)                                                                    gCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGAc                                                                                                     <  7:201836/127‑1 (MQ=255)                                                                             ccATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCAcc                                                                      >  4:96200/1‑149 (MQ=255)                                                                                      cTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCC‑CGTCACCGGTgctgcgg                                                            <  4:36223/149‑7 (MQ=255)                                                                                           ttattGGCTTCTGGGGCCTGCAGGCTGGCGGCAGTGGCCTGGGTGTTGCGCAGCAAGGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGct                                                         <  8:157051/147‑1 (MQ=255)                                                                                            tataGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGct                                                         >  7:157051/1‑147 (MQ=255)                                                                                              taGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATa                                                                                   <  3:136624/119‑1 (MQ=255)                                                                                              taGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATa                                                                                   >  4:136624/1‑119 (MQ=255)                                                                                              taGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTc                                                     >  5:185227/1‑149 (MQ=255)                                                                                               aatcATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCg                                                    <  3:184172/146‑1 (MQ=255)                                                                                                            cTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTcc                                             <  7:50588/143‑1 (MQ=255)                                                                                                            cTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTcc                                             >  8:50588/1‑143 (MQ=255)                                                                                                            cTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAAc                                       >  5:117870/1‑149 (MQ=255)                                                                                                                        ggcAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTg                                                                                                                                  >  2:338880/1‑46 (MQ=255)                                                                                                                        ggcAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTg                                                                                                                                  <  1:338880/46‑1 (MQ=255)                                                                                                                        ggcAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGAt                                                                                                                             >  6:33207/1‑51 (MQ=255)                                                                                                                        ggcAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGAt                                                                                                                             <  5:33207/51‑1 (MQ=255)                                                                                                                         gcAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAc                          <  6:185227/149‑1 (MQ=255)                                                                                                                           aGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAcgc                        >  4:124776/1‑149 (MQ=255)                                                                                                                            gtgtCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCGGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAcgcg                       <  5:379442/149‑1 (MQ=255)                                                                                                                                  tGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTATTCGGGCTTCCAGAAACGCTGGATGCCTACGCGGCCg                   >  4:192935/1‑147 (MQ=255)                                                                                                                                    ggTGTAGCGCAGCAATGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAg                <  4:80949/148‑1 (MQ=255)                                                                                                                                      tgtAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGc              >  1:220726/1‑148 (MQ=255)                                                                                                                                          gcgcAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGAt           >  6:222995/1‑147 (MQ=255)                                                                                                                                                  aCGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAcgcg                       >  2:369950/1‑127 (MQ=255)                                                                                                                                                  aCGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGc  >  6:357211/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CAGTGGAGCGGGGAACAGTCGGTTCATGGCTGCACCTGTACGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGC  >  NC_002947/2534080‑2534372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.