New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2534228 =	47 (0.800)	3 (0.050)	3/248	NT	7.5%	coding (1555/1680 nt)	mrpD	K(+)/H(+) antiporter subunit D
	?	NC_002947	2534266 =	30 (0.540)					coding (1517/1680 nt)	mrpD	K(+)/H(+) antiporter subunit D

CGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAGCAACGCCACCAGGCCCCAGCCGGC  >  NC_002947/2534120‑2534414                                                                                                                                                   |                                                                                                                                                     ggcctcgctgatcgccttcggccgcgtcggcatccagcgtttctggaagcccgaagagcgcccgtcaccggtgctgcggcgctatgaatgcctgcccatcgtcatcctGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCa                                                                                                                                                      >  5:60159‑M1/109‑147 (MQ=255)  gTCGCTCGAGGTGGGGCCAGGAATCGGCTGGTCGGCCATGACGGCTTTGATATAGGCATCTGGGGCCTGGAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACTAGCCGAGCAGGa                                                                                                                                                   <  6:247212/149‑1 (MQ=255)  gTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGa                                                                                                                                                   <  4:320550/149‑1 (MQ=255)  gTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGa                                                                                                                                                   >  4:78477/1‑149 (MQ=255)   tCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGAt                                                                                                                                                  >  6:379442/1‑149 (MQ=255)    cgcgcgAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGAt                                                                                                                                                  >  7:230232/1‑148 (MQ=255)     gcgcgAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGa                                                                                                                                                <  2:136949/149‑1 (MQ=255)         gAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGAt                                                                                                                                            <  2:130931/149‑1 (MQ=255)         gAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGAt                                                                                                                                            <  6:274288/149‑1 (MQ=255)               gggACAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGggcag                                                                                                                                      >  3:261238/1‑149 (MQ=255)                      gAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAATGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCa                                                                                                                               >  3:80949/1‑149 (MQ=255)                            gCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGAc                                                                                                                                               >  8:201836/1‑127 (MQ=255)                            gCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGAc                                                                                                                                               <  7:201836/127‑1 (MQ=255)                                     ccATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCAcc                                                                                                                >  4:96200/1‑149 (MQ=255)                                              cTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCC‑CGTCACCGGTgctgcgg                                                                                                      <  4:36223/149‑7 (MQ=255)                                                   ttattGGCTTCTGGGGCCTGCAGGCTGGCGGCAGTGGCCTGGGTGTTGCGCAGCAAGGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGct                                                                                                   <  8:157051/147‑1 (MQ=255)                                                    tataGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGct                                                                                                   >  7:157051/1‑147 (MQ=255)                                                      taGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATa                                                                                                                             >  4:136624/1‑119 (MQ=255)                                                      taGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATa                                                                                                                             <  3:136624/119‑1 (MQ=255)                                                      taGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTc                                                                                               >  5:185227/1‑149 (MQ=255)                                                       aatcATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCg                                                                                              <  3:184172/146‑1 (MQ=255)                                                                    cTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTcc                                                                                       <  7:50588/143‑1 (MQ=255)                                                                    cTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTcc                                                                                       >  8:50588/1‑143 (MQ=255)                                                                    cTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAAc                                                                                 >  5:117870/1‑149 (MQ=255)                                                                                 gcAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAc                                                                    <  6:185227/149‑1 (MQ=255)                                                                                   aGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAcgc                                                                  >  4:124776/1‑149 (MQ=255)                                                                                    gtgtCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCGGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAcgcg                                                                 <  5:379442/149‑1 (MQ=255)                                                                                          tGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTATTCGGGCTTCCAGAAACGCTGGATGCCTACGCGGCCg                                                             >  4:192935/1‑147 (MQ=255)                                                                                            ggTGTAGCGCAGCAATGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAg                                                          <  4:80949/148‑1 (MQ=255)                                                                                              tgtAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGc                                                        >  1:220726/1‑148 (MQ=255)                                                                                                  gcgcAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGAt                                                     >  6:222995/1‑147 (MQ=255)                                                                                                          aCGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGAcgcg                                                                 >  2:369950/1‑127 (MQ=255)                                                                                                          aCGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGc                                            >  6:357211/1‑148 (MQ=255)                                                                                                            tgctcggcttgtgcctcatcctcagcttcaaggccgagcAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGcc                                           >  5:60159‑M2/40‑147 (MQ=255)                                                                                                              ctcggcttgtgcctcatcctcagcttcaaggccgagcAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGa                                                      >  1:346137‑M2/38‑134 (MQ=255)                                                                                                              ctcggcttgtgcctcatcctcagcttcaaggccgagcAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGa                                                      <  2:346137‑M2/97‑1 (MQ=255)                                                                                                               TCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGcc                                      <  8:203972‑M1/149‑1 (MQ=255)                                                                                                                 GGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCgg                                    >  8:230232‑M1/1‑149 (MQ=255)                                                                                                                     ttGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAg                                >  3:114810/1‑149 (MQ=255)                                                                                                                           cTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAg                          <  4:261238/149‑1 (MQ=255)                                                                                                                           cTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAg                          <  3:124776/149‑1 (MQ=255)                                                                                                                                        acaAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAGCAACGCCACCAgg             >  3:21283/1‑149 (MQ=255)                                                                                                                                            gccgagcAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGAt                             <  7:337004‑M2/122‑1 (MQ=255)                                                                                                                                            gccgagcAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGAt                             >  8:337004‑M2/8‑129 (MQ=255)                                                                                                                                             ccgagcAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCTATCAGCGAGGCCAAGCCGGACAGGATCAGCAACGCCACCAGGCCCCa        <  6:117870‑M2/143‑1 (MQ=255)                                                                                                                                                  cAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAGCAACGCCACCAGGCCCCAGCCgg   <  4:125596‑M2/148‑1 (MQ=255)                                                                                                                                                   aGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCCCCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAGCAACGCCACCAGGCCCCAGCcggc  <  5:357211/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGTCGCGCGAGGTGGGGCCAGGAATCGGCTGGGCGGCCATCACGGCTTTGATATAGGCATCTGGGGCCTGCAGGCTGGCGGCAGTGTCCTGGGTGTAGCGCAGCAACGGCTCGGCCTTGAAGCTGAGGATGAGGCACAAGCCGAGCAGGATGACGATGGGCAGGCATTCATAGCGCCGCAGCACCGGTGACGGGCGCTCTTCGGGCTTCCAGAAACGCTGGATGCCGACGCGGCCGAAGGCGATCAGCGAGGCCAAGCCGGACAGGATCAGCAACGCCACCAGGCCCCAGCCGGC  >  NC_002947/2534120‑2534414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.