New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2607902	48 (0.820)	3 (0.050)	3/244	NT	6.6%	coding (11/414 nt)	PP_5514	hypothetical protein
	?	NC_002947	= 2607924	40 (0.730)					coding (33/414 nt)	PP_5514	hypothetical protein

AGAACGACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATA  >  NC_002947/2607757‑2608045                                                                                                                                                  |                                                                                                                                                aGAACGACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGggaggagga                                                                                                                                              >  8:153029/1‑149 (MQ=255) aGAACGACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGggaggagg                                                                                                                                               <  3:362404/148‑1 (MQ=255)  gAACGACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGAc                                                                                                                                             >  6:240399/1‑149 (MQ=255)   aaCGACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGAcc                                                                                                                                            <  5:326052/149‑1 (MQ=255)      gACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCggg                                                                                                                                         <  5:240399/149‑1 (MQ=255)       aCTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGa                                                                                                                                        <  3:43791/149‑1 (MQ=255)        cTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGAc                                                                                                                                       >  5:236944/1‑149 (MQ=255)        cTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGAc                                                                                                                                       <  3:35061/149‑1 (MQ=255)           aCCGATGCCTTCGGCCTTACTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGa                                                                                                                                     >  8:90146/1‑148 (MQ=255)                tGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTg                                                                                                                               <  5:83887/149‑1 (MQ=255)                  ccTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTgg                                                                                                                              >  2:45712/1‑148 (MQ=255)                   cTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGaa                                                                                                                            <  7:153029/149‑1 (MQ=255)                   cTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGaa                                                                                                                            <  4:66126/149‑1 (MQ=255)                   cTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGaa                                                                                                                            <  4:69966/149‑1 (MQ=255)                               tGAGCGCGGACTGGGAGGGCTTCTTTGTCATACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCt                                                                                                                >  1:30134/1‑149 (MQ=255)                                gAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTg                                                                                                               >  2:156668/1‑149 (MQ=255)                                   cgcgGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCaa                                                                                                            <  1:144333/149‑1 (MQ=255)                                   cgcgGACTGGGAGGGCGTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGActtccagatttcgtcccggtcctcctcccgcatgttg                                                                                                            <  8:265827‑M1/149‑38 (MQ=255)                                    gcgGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAAc                                                                                                           <  5:210758/149‑1 (MQ=255)                                      ggACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAAccc                                                                                                         >  7:213417/1‑149 (MQ=255)                                         cTGGGAGGGCTTCTTTTTCAAACGCAGCCAGGCTGTCTGCGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGTCGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTg                                                                                                      <  2:157254/149‑1 (MQ=255)                                            ggAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTgg                                                                                                     >  6:304/1‑147 (MQ=255)                                              aGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGc                                                                                                 <  7:90146/149‑1 (MQ=255)                                                 gCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCAtt                                                                                              <  6:236944/149‑1 (MQ=255)                                                   ttcttTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCggg                                                                                                                                         >  8:21146/1‑104 (MQ=255)                                                   ttcttTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCggg                                                                                                                                         <  7:21146/104‑1 (MQ=255)                                                   ttcttTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGc                                                                                            >  1:233986/1‑149 (MQ=255)                                                      tttGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGActtccagatttcgtcccggtcctcctcccgc                                                                                                                  <  2:263107‑M1/124‑32 (MQ=255)                                                      tttGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGActtccagatttcgtcccggtcctcctcccgc                                                                                                                  >  1:263107‑M1/1‑93 (MQ=255)                                                          tCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTg                                                                                      <  8:213417/148‑1 (MQ=255)                                                          tCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCATGGAAGCATTGCTCCTTgg                                                                                     >  3:15959/1‑149 (MQ=255)                                                             aaCGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTggg                                                                                    >  3:128137/1‑147 (MQ=255)                                                              aCGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCATCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTggg                                                                                    >  1:253776/1‑146 (MQ=255)                                                               cGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGa                                                                                <  5:304/149‑1 (MQ=255)                                                                     cAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCAt                                                                                               <  1:306416/128‑1 (MQ=255)                                                                     cAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCAt                                                                                               >  2:306416/1‑128 (MQ=255)                                                                              tGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCa                                                                 >  7:318480/1‑149 (MQ=255)                                                                                aGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACt                                                               >  6:257190/1‑149 (MQ=255)                                                                                  gcggcgTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTg                                                             >  2:55834/1‑149 (MQ=255)                                                                                    ggcgTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGa                                                           >  4:117108/1‑149 (MQ=255)                                                                                     gcgTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGa                                                           <  3:117108/148‑1 (MQ=255)                                                                                       gTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGc                                                                                            <  1:16968/113‑1 (MQ=255)                                                                                       gTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGc                                                                                            >  2:16968/1‑113 (MQ=255)                                                                                            tACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTg                                                   <  8:318480/149‑1 (MQ=255)                                                                                                 gggACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTc                                               <  1:45712/148‑1 (MQ=255)                                                                                                        cacCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCgt                                       <  5:257190/149‑1 (MQ=255)                                                                                                          ccGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTTCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCgtgt                                     <  4:15959/149‑1 (MQ=255)                                                                                                          ccGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCgtgt                                     <  2:30134/149‑1 (MQ=255)                                                                                                                 acTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTc                                         >  4:282340/1‑138 (MQ=255)                                                                                                                 acTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTc                                         <  3:282340/138‑1 (MQ=255)                                                                                                                          aGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGgt                     <  4:128137/149‑1 (MQ=255)                                                                                                                            cTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGgtgt                   >  1:265061/1‑149 (MQ=255)                                                                                                                                 cgccAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTc              >  8:169440/1‑149 (MQ=255)                                                                                                                                    cAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGtcctcccgcatgttggcggccagctcatggcagtgtgccggtgtcgtcccaagtacccacgccgcctcagacagcctggctgcgtttgacaaagacgccctcccagtccgcg           <  8:265827‑M2/149‑113 (MQ=255)                                                                                                                                       cATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGAt                                                                           >  8:343565/1‑82 (MQ=255)                                                                                                                                          gCGGGAGGAGGACCGGGACGAAATCTGGAAGtcctcccgcatgttggcggccagctcatggcagtgtgccggtgtcgtcccaagtacccacgccgcctcagacagcctggctgcgtttgacaaa                              <  2:263107‑M2/124‑94 (MQ=255)                                                                                                                                          gCGGGAGGAGGACCGGGACGAAATCTGGAAGtcctcccgcatgttggcggccagctcatggcagtgtgccggtgtcgtcccaagtacccacgccgcctcagacagcctggctgcgtttgacaaa                              >  1:263107‑M2/1‑31 (MQ=255)                                                                                                                                             ggaggaggaCCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGata  <  1:55834/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                AGAACGACTCACCGATGCCTTCGGCCTTCCTGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATA  >  NC_002947/2607757‑2608045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.