New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2607902	48 (0.820)	3 (0.050)	3/244	NT	6.6%	coding (11/414 nt)	PP_5514	hypothetical protein
	?	NC_002947	= 2607924	40 (0.730)					coding (33/414 nt)	PP_5514	hypothetical protein

TGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCTCCCTGGATGCTC  >  NC_002947/2607787‑2608068                                                                                                                                          |                                                                                                                                                 tGAGCGCGGACTGGGAGGGCTTCTTTGTCATACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCt                                                                                                                                       >  1:30134/1‑149 (MQ=255)  gAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTg                                                                                                                                      >  2:156668/1‑149 (MQ=255)     cgcgGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCaa                                                                                                                                   <  1:144333/149‑1 (MQ=255)      gcgGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAAc                                                                                                                                  <  5:210758/149‑1 (MQ=255)        ggACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAAccc                                                                                                                                >  7:213417/1‑149 (MQ=255)           cTGGGAGGGCTTCTTTTTCAAACGCAGCCAGGCTGTCTGCGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGTCGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTg                                                                                                                             <  2:157254/149‑1 (MQ=255)              ggAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTgg                                                                                                                            >  6:304/1‑147 (MQ=255)                aGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGc                                                                                                                        <  7:90146/149‑1 (MQ=255)                   gCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCAtt                                                                                                                     <  6:236944/149‑1 (MQ=255)                     ttcttTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGc                                                                                                                   >  1:233986/1‑149 (MQ=255)                            tCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTg                                                                                                             <  8:213417/148‑1 (MQ=255)                            tCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCATGGAAGCATTGCTCCTTgg                                                                                                            >  3:15959/1‑149 (MQ=255)                               aaCGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTggg                                                                                                           >  3:128137/1‑147 (MQ=255)                                aCGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCATCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTggg                                                                                                           >  1:253776/1‑146 (MQ=255)                                 cGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGa                                                                                                       <  5:304/149‑1 (MQ=255)                                       cAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCAt                                                                                                                      <  1:306416/128‑1 (MQ=255)                                       cAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCAt                                                                                                                      >  2:306416/1‑128 (MQ=255)                                                tGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCa                                                                                        >  7:318480/1‑149 (MQ=255)                                                  aGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACt                                                                                      >  6:257190/1‑149 (MQ=255)                                                    gcggcgTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTg                                                                                    >  2:55834/1‑149 (MQ=255)                                                      ggcgTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGa                                                                                  >  4:117108/1‑149 (MQ=255)                                                       gcgTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGa                                                                                  <  3:117108/148‑1 (MQ=255)                                                         gTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGc                                                                                                                   >  2:16968/1‑113 (MQ=255)                                                         gTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGc                                                                                                                   <  1:16968/113‑1 (MQ=255)                                                              tACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTg                                                                          <  8:318480/149‑1 (MQ=255)                                                                   gggACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTc                                                                      <  1:45712/148‑1 (MQ=255)                                                                          cacCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCgt                                                              <  5:257190/149‑1 (MQ=255)                                                                            ccGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTTCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCgtgt                                                            <  4:15959/149‑1 (MQ=255)                                                                            ccGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCgtgt                                                            <  2:30134/149‑1 (MQ=255)                                                                                   acTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTc                                                                <  3:282340/138‑1 (MQ=255)                                                                                   acTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTc                                                                >  4:282340/1‑138 (MQ=255)                                                                                            aGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGgt                                            <  4:128137/149‑1 (MQ=255)                                                                                              cTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGgtgt                                          >  1:265061/1‑149 (MQ=255)                                                                                                   cgccAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTc                                     >  8:169440/1‑149 (MQ=255)                                                                                                      cAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGtcctcccgcatgttggcggccagctcatggcagtgtgccggtgtcgtcccaagtacccacgccgcctcagacagcctggctgcgtttgacaaagacgccctcccagtccgcg                                  <  8:265827‑M2/149‑113 (MQ=255)                                                                                                         cATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGAt                                                                                                  >  8:343565/1‑82 (MQ=255)                                                                                                            gCGGGAGGAGGACCGGGACGAAATCTGGAAGtcctcccgcatgttggcggccagctcatggcagtgtgccggtgtcgtcccaagtacccacgccgcctcagacagcctggctgcgtttgacaaa                                                     <  2:263107‑M2/124‑94 (MQ=255)                                                                                                            gCGGGAGGAGGACCGGGACGAAATCTGGAAGtcctcccgcatgttggcggccagctcatggcagtgtgccggtgtcgtcccaagtacccacgccgcctcagacagcctggctgcgtttgacaaa                                                     >  1:263107‑M2/1‑31 (MQ=255)                                                                                                               ggaggaggaCCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGata                         <  1:55834/149‑1 (MQ=255)                                                                                                                     ggaCCGGGACGAAATCTGGAAGGCCTCCCGCCTGCCACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCATCGGTGTGGCTACGCTGACa                             >  7:56956/1‑139 (MQ=255)                                                                                                                          gggACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCt              >  2:72547/1‑149 (MQ=255)                                                                                                                           ggACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCTc             >  5:159789/1‑149 (MQ=255)                                                                                                                           ggACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCTc             >  4:107443/1‑149 (MQ=255)                                                                                                                               gAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCTCCCTg         >  3:58019/1‑149 (MQ=255)                                                                                                                               gAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGAACTTGGACATTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGATTACAGATATGTTCGGCGCTACCTg         >  6:64705/1‑149 (MQ=255)                                                                                                                                      ggAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCTCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGgtgt                                          >  2:190570/1‑109 (MQ=255)                                                                                                                                      ggAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCTCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGgtgt                                          <  1:190570/109‑1 (MQ=255)                                                                                                                                      ggAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCTCCCTGGATGCTc  >  7:195725/1‑149 (MQ=255)                                                                                                                                      ggAAGTCCTCCCGCCTGCAACCCCTCGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCTCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCCTCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCGCCCTGGATGCTc  >  7:190404/1‑149 (MQ=255)                                                                                                                                       gAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGcc                                                     <  7:181802/97‑1 (MQ=255)                                                                                                                                       gAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGcc                                                     >  8:181802/1‑97 (MQ=255)                                                                                                                                          |                                                                                                                                                 TGAGCGCGGACTGGGAGGGCTTCTTTGTCAAACGCAGCCAGGCTGTCTGAGGCGGCGTGGGTACTTGGGACGACACCGGCACACTGCCATGAGCTGGCCGCCAACATGCGGGAGGAGGACCGGGACGAAATCTGGAAGTCCTCCCGCCTGCAACCCCTGGAAGCATTGCTCCTTGGGCAGATGGATTCCCTGCGCACTTGGACCTTCCTGGTTCGTGGTCGTGTGGTCGCCATCTTCGGTGTGGCTCCGCTGACAGATATGGTCGGCGCTCCCTGGATGCTC  >  NC_002947/2607787‑2608068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.